LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g2361	ATGGTCATACCTATGGGCAATATTTCTTGCATGCTTGCTTTTCTTCTCTCTTGTCTAATATCTAGAGCCAGCGCCCAGGTTACCTACAAGTACTGTGATAACAAGGAAGGGAACTACACAATGAACAGCACCTATTACAATAATCTCAACACCCTTCTATCCAAGCTTTCTTCCCACACACAAATTAACTATGGTTTCTACAACTTCTCATATGGTCAAAANAATGACAAAGTAAACGCCATTGGGCTGTGCAGAGGAGATGTTGAGCCAGATGAGTGCCGCAGGTGNCTCAACGATTCTGCAGCCACGATTACACAGCTTTGTCCAAATCAGAAAGAGGCACATTTGTGGTTTAAGGCCAACGAATGCCAGTTGCGTTATTCTCCGCGCTCAATATTCGGTGTCGTGGAATCTTCTCCTTGGTTCTACATTAAGAACAGAAACAATGTAACGGAACCGGATAAGTTTAACCAAGCCCTTTCCAACTTAATGAGGAATCTCACAGCCTTGGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTGCGGATAGGGCTATTGCATCAAACTTTAAAACCGTATACGTATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGATAGGCTGCAGTTCATGCTTGGAAAAGGCTATCTCAGAAATCCCATCGTGTTGTGTGAACGCGAAAGGTGGTAGAATTCATGGACCAAGTTGTAATATTAGATTCGAAAGAGAATTGTTCTACGATCAAACGCCTAAATTAGACTCTGACGTAACCGCTCCATCTCCGTCACCTCCTTCCTCCCTGAATAACACTTCCCCCGAAGGAAGCAACAACACGGTAATAATTGTTATTGCCGTTGTTCTTTCTACCGTTGTTGTTGCTGTCGTTTCCTTCCTTTGTCTCTGCAGTCACTTAAGGAGGAGGAAGGCAAGAAAACGTTTAGCAGTTAATCAAGATGATGATGACATTGAAATTNCTCAGTCATTGCAATTCGACTTCGACACAATACGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGAGAAGGTGGATTTGGAGCTGTTTACAAGGGTAGGCTCCCCAATGAACAGATGATTGCAGTCAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACATTGAGTTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACAGAAATTTAGTTAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTCGTCTATGAGTTTGTTCCTAACAAAAGCCTTGATTATTTCATATTTGATCCAGCCAAGAAAGCACTGTTGGATTGGGCAATGCGATACAAAATCATAAAAGGTATCAGCCGAGGGCTTCTCTACCTTCACGAAGATTCTCTNCTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACNAAGAGATGAATCCTAAGATAGCAGATTTTGGCATTGCAAGACTGGTTTTACTGGATCAAACTCACGCAAATACAAATAGAGTTGTGGGAACCTATGGATACATGGCACCGGAGTACATAATGCAAGGACAATTTTCGGTAAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGGCAGAAAAACAGTAGCTTTCGTCATGGGGAGAATGTTGAGGATCTACTGAGCTTCGTAAGTGCTATTTCCTCCTTATTATTTATTTTTCATTAA	1719	0.4183	MVIPMGNISCMLAFLLSCLISRASAQVTYKYCDNKEGNYTMNSTYYNNLNTLLSKLSSHTQINYGFYNFSYGQXNDKVNAIGLCRGDVEPDECRRXLNDSAATITQLCPNQKEAHLWFKANECQLRYSPRSIFGVVESSPWFYIKNRNNVTEPDKFNQALSNLMRNLTALAASGDSRRKYAADRAIASNFKTVYVYGLVQCTPDLSEIGCSSCLEKAISEIPSCCVNAKGGRIHGPSCNIRFERELFYDQTPKLDSDVTAPSPSPPSSLNNTSPEGSNNTVIIVIAVVLSTVVVAVVSFLCLCSHLRRRKARKRLAVNQDDDDIEIXQSLQFDFDTIRVATEDFSDSNKLGEGGFGAVYKGRLPNEQMIAVKRLSSGSSQGDIEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAKKALLDWAMRYKIIKGISRGLLYLHEDSLLRIIHRDLKASNILLDXEMNPKIADFGIARLVLLDQTHANTNRVVGTYGYMAPEYIMQGQFSVKSDIFSFGVLLLEIVSGQKNSSFRHGENVEDLLSFVSAISSLLFIFH*	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g2361	572	ProSiteProfiles	Gnk2-homologous domain profile.	27	132	IPR002902	-
	Vra8g2361	572	Pfam	Protein kinase domain	345	548	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2361	572	MobiDBLite	consensus disorder prediction	253	273	-	-
	Vra8g2361	572	SUPERFAMILY	Protein kinase-like (PK-like)	323	559	IPR011009	-
	Vra8g2361	572	SMART	serkin_6	344	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2361	572	Pfam	Salt stress response/antifungal	148	244	IPR002902	-
	Vra8g2361	572	Pfam	Salt stress response/antifungal	32	128	IPR002902	-
	Vra8g2361	572	MobiDBLite	consensus disorder prediction	255	273	-	-
	Vra8g2361	572	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	14	561	-	-
	Vra8g2361	572	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Vra8g2361	572	Gene3D	-	140	247	IPR038408	-
	Vra8g2361	572	Gene3D	-	23	131	IPR038408	-
	Vra8g2361	572	ProSiteProfiles	Gnk2-homologous domain profile.	138	247	IPR002902	-
	Vra8g2361	572	ProSiteProfiles	Protein kinase domain profile.	344	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2361	572	ProSitePatterns	Protein kinases ATP-binding region signature.	350	372	IPR017441	GO:0005524
	Vra8g2361	572	Gene3D	Phosphorylase Kinase; domain 1	304	419	-	-
	Vra8g2361	572	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	14	561	-	-
	Vra8g2361	572	Gene3D	Transferase(Phosphotransferase) domain 1	420	567	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g2361	Vra-Chr8	41813587	41816329	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g2361	11	561	Receptor kinase-like Gene Family	AT4G05200	46.914	1.26e-170	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra8g2361		Pkinase	5.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g2361	-		-	var:108324785	902.508