Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2359 ATGATAATACGCAAAGCTTCAGTTAAGGTTGTTGGTTGTTCTGATTATGTGATGGGTGCCGTTTCTTGCATGCTTCTTTTCTTTCTCTGTTGTCTAATACCTGAAGCCAGTGCCCAGCATCTCTTCCAAACCTGTGATAACAACAACGGGAACTACACAGCTAATGGCACCTATAGCGCCAATCTCAACACCCTTTTATCCACTCTTTCTTCCAAAACAGAAATCAACTATGGTTTCTACAACTTCTCCCATGGTCAAAACGCAGACAGAGTCAACGCCATTGGGCTGTGCAGGGGAGATGTGGAGCCAAATCAGTGCCGCAGTTGCCTCAAAGATGCCGGAGGCAATATCACACAGCTTTGTCCAAACCAGAAACAGGCTACTATATATTATGACAACTGCATGTTGCGCTACTCAAACGACTCAATATTTGGGGTCTTGAATAGTAACCCCCACTTTTATATGTGCAACCGAAATAATGCAACAGAAGCGGCTGAGTTCAATCAAGTGCTCCAAAACTTATTAAGGGAACTCCAAGGTAAAGCAGCATCCGGTGACTCCCGTCGTAAGTATGCTACGGATAATGACACAACTACCAATTTTCAAGCCATATATGGTCTTGTGCAATGCACCCCTGATTTGACTCAGACACAGTGCAACGATTGCTTGGATGTGGCTATTTCACAAATCCCAATTTACTGCAAAGACAAGAGAGGTGGTAGAGTTGTTGGACCCAGCTGCAATACTAGATATGAAGACTACCGCTTCTATCGACAGACAACGATAATAGACCCAGAGACACCACCACCCACAATTAACAATTCCACGGAAGAAAGTAGCAACACAACAACAATTGTCATTGCCGTAGTTGTGCCTACTGTTGTTGTTGTTTTGCTCACCTGTCTCTTCATTTGTTTAAGGAGGAGAAAGGCAAGGAAAAATCTTGAAGTTAAAAAAGAAGAAAGAGAAGAAGAAGATGAAGTTGAGGATGAAATTAAAATTGCCGAATCATTGCAATTCAACTTTGAGACAATACGAGTTGCTACCGAGAACTTCTCTGATTCTAATAAACTTGGACAAGGCGGATTTGGAGCTGTTTACCGGGGTAAACTCTCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCAAGAGATTCTGGGCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGAAATTTAGTTAGGCTACTCGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGGTACTTTTTATCACTGCATAAATACAATCCTGTTCTATCATTACAAACCTAATTATTCATAGAGTTAAAAACTGTTGGCGGCTATATATGCAGATCCAGCCATGAAAGCACAATTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGAGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTATTGGATCAAACTCAAGCAAACACAAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCGGTGAAATCAGACGTCTTCAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATCAATAATGGGGAGAACATGGAGGATCTGCTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCATTAAATATTATAGATCCATCACTCAACAACAATTCACGGAATGAAATGCTTAGATGCATCCATATCGGTTTACTCTGTGTTCAAGAAAATTTAATTGATAGACCGACCATGGCTACTATTATACTGATGCTTAACAGCTATTCTCTGAGTCTTCCTATTCCAGCAGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGAAATGCAGTCATGGGAGTATAATTCAAGGGAAATAGGATCAAGTGAACCAATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGTTATACCCTCGCTAG 2148 0.406 MIIRKASVKVVGCSDYVMGAVSCMLLFFLCCLIPEASAQHLFQTCDNNNGNYTANGTYSANLNTLLSTLSSKTEINYGFYNFSHGQNADRVNAIGLCRGDVEPNQCRSCLKDAGGNITQLCPNQKQATIYYDNCMLRYSNDSIFGVLNSNPHFYMCNRNNATEAAEFNQVLQNLLRELQGKAASGDSRRKYATDNDTTTNFQAIYGLVQCTPDLTQTQCNDCLDVAISQIPIYCKDKRGGRVVGPSCNTRYEDYRFYRQTTIIDPETPPPTINNSTEESSNTTTIVIAVVVPTVVVVLLTCLFICLRRRKARKNLEVKKEEREEEDEVEDEIKIAESLQFNFETIRVATENFSDSNKLGQGGFGAVYRGKLSNGQIIAVKRLSRDSGQGDTEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFGTFYHCINTILFYHYKPNYS*S*KLLAAIYADPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTQANTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKALNIIDPSLNNNSRNEMLRCIHIGLLCVQENLIDRPTMATIILMLNSYSLSLPIPAEPAFYMNSRTRSFPEMQSWEYNSREIGSSEPILKSAQESENEASITELYPR* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2359 713 SMART serkin_6 352 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2359 713 MobiDBLite consensus disorder prediction 692 706 - -
Vra8g2359 713 CDD STKc_IRAK 358 652 - -
Vra8g2359 713 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 21 440 - -
Vra8g2359 713 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 446 687 - -
Vra8g2359 713 Gene3D Phosphorylase Kinase; domain 1 311 427 - -
Vra8g2359 713 SUPERFAMILY Protein kinase-like (PK-like) 335 651 IPR011009 -
Vra8g2359 713 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Vra8g2359 713 MobiDBLite consensus disorder prediction 692 713 - -
Vra8g2359 713 Pfam Salt stress response/antifungal 45 140 IPR002902 -
Vra8g2359 713 Pfam Salt stress response/antifungal 156 254 IPR002902 -
Vra8g2359 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Vra8g2359 713 Gene3D Transferase(Phosphotransferase) domain 1 461 658 - -
Vra8g2359 713 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vra8g2359 713 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 440 - -
Vra8g2359 713 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 446 687 - -
Vra8g2359 713 Pfam Protein tyrosine and serine/threonine kinase 355 648 IPR001245 GO:0004672|GO:0006468
Vra8g2359 713 ProSiteProfiles Protein kinase domain profile. 352 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2359 713 Coils Coil 308 338 - -
Vra8g2359 713 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Vra8g2359 713 Gene3D - 149 256 IPR038408 -
Vra8g2359 713 Gene3D - 37 142 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2359 Vra-Chr8 41800982 41804366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2359 25 713 Receptor kinase-like Gene Family AT4G21410 47.214 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2359 PK_Tyr_Ser-Thr 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2359 - - vra:106771832 1357.81