LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g2356	ATGGTCTCTGAAACAGTGCTCTTTTTCCTGTCCCTTCTTGGTATTCTTATATCTGAAGCTATTGCCGAGCCAGATTACCAATACAATTACACAGTCTGCTACCAAAGTGGAGACTATGCTCCTAATGCCACCTACCACACTAACCTCAACACTGCTCTTTCAAGGCTCACTTCTAACACCCAAATTGATTATGGCTCCTACAACTCCTCCTATGGCCAAGACTCTGATAGAGTCTACGCAACTGGCCTTTGTAGAGGAGATGTTAGCCCACATACTTGCGTTACTTGCCTCAACCATTCTGCCTCCCTTCTCTTAAAGCACTGTCCACATCAGAAGGAAGCTGTGGGAATATTTGATTTATGCATGTTACATTATGCAAATTACTCGATATTTGATTACCAAGACTCTAGTTTCCGCGTTTATTTTTGGTGGGAAACTAATGTAACAGATTGGAATCAGTACAGTTATGTGCTGAACAAGTTGCTGTTAAAACTAAGAGAGAAAGCCGCATCGGCTGACTCCTTTCACGGAAGTAAATTTGCTGCAGGAAATGCAACTGGTCCGAGTTCTGAAACTGTGTACGCCGTTGTTCAGTGCTCACCTGAATTGACCGTGGCAGAGTGCGACGACTGCTTAGGTGGTGCCTTTTCAGAAATATCCAAATATTGTACTAACAGAATAGGTTGCGCAATTGTTAAATTGAGCTGTAATTTCAGATATATGAACTCCAGCTTCTCTGAGCCTACTGCGGATACACTAGCACTACAACTGCCACCACAAGGATTTGCATCTCCTCCTTCATCATCACCTACACCATCCACCACTTCAAACTCTTCCGAGATTTCTTATCATGGAAAGAGCAACAGATCACAACCTGTCAACGCCAAGTACGTTGTTGTGCCAGTTCTTGTCTTTACTGGGACGCTGATTTTTATTTTCATCTATTTAAGAGTCAGGAAGACAAGAAAATATTTTGGGAGTGAAGCTAAGGTCGATGATGAAATTATACAATTAGAGTCGTCTCGATTTGACCTTGACGCTATCAGAGTCGCTACAAACAACTTCTCTGATGAAAACAAGCTAGGACAAGGAGGATTTGGACCTGTTTACAAGGGCACGCTCTTCAGTGAACAAGTAGTAGCAGTCAAAAGGTTATGTAGCAACTCTGGCCAAGGAGATATTGAGTTCAAGAATGAAGTACTATTAATGTCAAGGCTTCAGCACCGAAATTTAGTTAAGCTCCTTGGTTTCTGTTTTGAAAGAGAAGAACGACTCCTTGTCTATGAGTTTCTTCCCAACAAAAGTCTTGACAACCACATATTTGATCACATCGGGAGAGCACGTTTGGATTGGAAAAAACGCTACAGTATAATTAAAGGCATTGCTTATGGCCTTCTTTATCTTCATGAGGATTCTCAGCAGAGGATTATTCACCGAGATCTCAAATTGAGCAATATTCTTTTAGATGATGACATGAATCCTAAGATTTCAGATTTTGGTTTTGCAAGGCTTTTTAATGTGGACCAAACTCAGTTTAATGCAAGTAAAATTGCAGGAACCTTTGGATACATGGCACCTGAGTATGCAAGACACGGAAAACTCTCGATGAAGTTAGATGTCTTCAGTTTTGGTGTAATAATACTAGAGATTGTAAGTGGCCAAAAGAATGGTGGATTTCGTAATGAAGAGAATGTGGAGCATCTATTAAGCTTCGCTTGGAAAAACTGGATGAAAGGGAGAACAGCAAATATTATAGATCCCACCTTACATAATGGTTTGAGAGATGAAATAGTGAGATGCATTCACATTGGACTACTTTGTGTTCAAGAAAAGGCTGTTGATAGACCCACAATGGCATCGGTGGTGCTTATGCTTGATAGCCACTCTTTTGCTCTACCAGCTCCATTGCAACCTGCTTATTTTATGAAAAATAGTCGCTTAACAGCTATCCAGTTTTCGAGGTGTAGTTCTACGGAAACAGGGTCAAGTGAACAGAAAAGTTACTATGCTGATGGATCAGCTAATGAGGCTTCAATTAGTAGTCTATATCCTCGTTAA	2058	0.4082	MVSETVLFFLSLLGILISEAIAEPDYQYNYTVCYQSGDYAPNATYHTNLNTALSRLTSNTQIDYGSYNSSYGQDSDRVYATGLCRGDVSPHTCVTCLNHSASLLLKHCPHQKEAVGIFDLCMLHYANYSIFDYQDSSFRVYFWWETNVTDWNQYSYVLNKLLLKLREKAASADSFHGSKFAAGNATGPSSETVYAVVQCSPELTVAECDDCLGGAFSEISKYCTNRIGCAIVKLSCNFRYMNSSFSEPTADTLALQLPPQGFASPPSSSPTPSTTSNSSEISYHGKSNRSQPVNAKYVVVPVLVFTGTLIFIFIYLRVRKTRKYFGSEAKVDDEIIQLESSRFDLDAIRVATNNFSDENKLGQGGFGPVYKGTLFSEQVVAVKRLCSNSGQGDIEFKNEVLLMSRLQHRNLVKLLGFCFEREERLLVYEFLPNKSLDNHIFDHIGRARLDWKKRYSIIKGIAYGLLYLHEDSQQRIIHRDLKLSNILLDDDMNPKISDFGFARLFNVDQTQFNASKIAGTFGYMAPEYARHGKLSMKLDVFSFGVIILEIVSGQKNGGFRNEENVEHLLSFAWKNWMKGRTANIIDPTLHNGLRDEIVRCIHIGLLCVQEKAVDRPTMASVVLMLDSHSFALPAPLQPAYFMKNSRLTAIQFSRCSSTETGSSEQKSYYADGSANEASISSLYPR*	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g2356	685	Pfam	Protein kinase domain	356	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2356	685	ProSiteProfiles	Gnk2-homologous domain profile.	136	245	IPR002902	-
	Vra8g2356	685	SMART	serkin_6	355	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2356	685	SUPERFAMILY	Protein kinase-like (PK-like)	337	625	IPR011009	-
	Vra8g2356	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	476	488	IPR008271	GO:0004672\|GO:0006468
	Vra8g2356	685	MobiDBLite	consensus disorder prediction	267	288	-	-
	Vra8g2356	685	Pfam	Salt stress response/antifungal	148	242	IPR002902	-
	Vra8g2356	685	Pfam	Salt stress response/antifungal	33	128	IPR002902	-
	Vra8g2356	685	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	4	646	-	-
	Vra8g2356	685	ProSiteProfiles	Protein kinase domain profile.	355	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2356	685	CDD	STKc_IRAK	361	626	-	-
	Vra8g2356	685	Gene3D	-	26	130	IPR038408	-
	Vra8g2356	685	Gene3D	-	135	245	IPR038408	-
	Vra8g2356	685	ProSiteProfiles	Gnk2-homologous domain profile.	27	130	IPR002902	-
	Vra8g2356	685	MobiDBLite	consensus disorder prediction	261	288	-	-
	Vra8g2356	685	Gene3D	Transferase(Phosphotransferase) domain 1	431	631	-	-
	Vra8g2356	685	Gene3D	Phosphorylase Kinase; domain 1	318	430	-	-
	Vra8g2356	685	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	4	646	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g2356	Vra-Chr8	41787593	41790909	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g2356	5	685	Receptor kinase-like Gene Family	AT4G21410	43.205	5.75e-178	521

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra8g2356		Pkinase	1.2e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g2356	-		-	gmx:100790532	1009.98