Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2355 ATGGTCTCTCCGAGAGTTCTTTCTTTCCTTTTTCTACTCTTTACTCTCACATCTCAGGCTAATGCGAAGCCAGAATATCCATACTCTGTTTGCATCACAGAAGGTGGAGAGTATGCCCCTGATAGCACCTACCAGACCAACCTTCACACTGTTCTTTCAAGGATTATTTCCGACACCCAGATTGACTATGGCTTCTACAACTCCTCCTATGGCCAAGATTCTGATAGAGTCTACGCAACTGCCCTTTGCAGAGGAGATGTCACCCCACACACTTGCCTCACTTGCCTCAACAATTCTCGTTTACTTCTCCTAAAACAGTGTCCCCGTCAAAAACGTGCAGTGGGAGGATATGGTGAATGCATGTTGCACTATTCATATCGCTCAGTATTAGGTTACTATGATTCTGATTTCCGGGTCTACTTGCGTAGTGAAACCAATGTAACAGACTGGGATCAGTACAGTTATGTGCTGAAGAAGTTGCTGCCAATACTAAAAGTGAAAGCTGCGACAACTGATTCCAACTTGAATCGCAAATATGCTTCTGGAAATGCAACAGGTCCGGATTCTCAAACTGTATATGCTGCTGTTCAGTGTGCACCAGACTTGACAGAGGCAGAATGCAATGACTGCTTGGGTGGCGCTATTTCAGAATTACCAAAATGTTGTAATAGCAGATCCGGTGGAGTGGTTATTAAATTCAGGTGTAATTTCAGATACGAGAACTTCAGTTTTTATGAGCCTATGGCTGACACACAAACGCTACAGTTGTCACCACAAGGATCTCCATCTCCTCCTTCCCCTTCACCATTCACCACTAAAAATTCCCCAGAGAGTACTTATCATGGAAAAAGCAGCAAATTACAAGCTGTCATCGCGAAATGCGTTGTGCCTATTGTTGTCTTTTTTGGGTTGCTGATCTTTATTTGCATCTATTTAGGAGTGAGGAAGCCAACAAAACATTTTCAGAGTGAAGCTAAGGCTGATAAAGAGTCGTTACTAATAAACTTTGACACCATCAGAGTCGGTACAAACAACTTCTCCGACGCAAACAAGATTGGACAAGGTGGATTTGGACGTGTTTACAAGGGGAAGCTGTTCAATGAACAAGAAGTAGCAATCAAAAGGTTATGTAGCATCTCTGGTCAAGGAGATACTGAATTCAAGAATGAAGTGTTTTTGATGTCAAGGCTTCAACACAGAAATTTAGTAAGGCTCCTTGGTTTCTGTTTTGAAAAAGAAGAACGTCTCCTTGTCTATGAGTTTCTTCCCAATAAAAGCCTTGACAACTTCTTATTTGATCCCATCAAGCGCGCACATTTGGATTGGAAAACACGCTACAAAATAATTGAAGGCATTGCACGCGGCCTTCTATATCTTCATGAGGATTCTCAGCAGAGGATTATTCACCGTGATCTCAAATTGAGTAATATTCTTTTAGATGCAGATTTGAATCCAAAAATTTCAGATTTTGGCTTTGCAAGACTTTTTAATGTGGATCAAACTCAGGTTAAAGCAAGTAAAATTGCTGGAACCTACGGATACATGGCACCTGAGTATGCAAGACATGGAAAACTCTCAACGAAGTTAGATGTATTTAGTTTTGGTGTAATACTACTAGAGATTGTAAGTGGTCAAAAGAATGGTGGATTCCGAAATGGAGAGAATGTGGAGCATCTACTAAGCTTTGCTTGGACAAACTGGAGGAATGGGAGAGCAGCTAATATTATAGATCCCACCTTAAATAATGCTTTGGGAGATGAAATAGTGAGATGCATTCACATTGGATTACTTTGTGTTCAAGAAAAGGTTGCTGATAGACCAACAATGGCTTCGGTGGTCCTTATGCTTGATAGCCACTCTTTCGCTCTACCAGTTCCATTGCAACCTGCCTATTTTATGATTACTAGATGTTCATCGGTCTACCAGTTCTCGGAGTTCGGTTGTTTGGAAACAGGATCAAATGAACAGAAAATTGACTCTGCTGATGCATCCACAAACGAGGCTTCAATTAGTAGTTTATATCCTCGTTAA 2031 0.4116 MVSPRVLSFLFLLFTLTSQANAKPEYPYSVCITEGGEYAPDSTYQTNLHTVLSRIISDTQIDYGFYNSSYGQDSDRVYATALCRGDVTPHTCLTCLNNSRLLLLKQCPRQKRAVGGYGECMLHYSYRSVLGYYDSDFRVYLRSETNVTDWDQYSYVLKKLLPILKVKAATTDSNLNRKYASGNATGPDSQTVYAAVQCAPDLTEAECNDCLGGAISELPKCCNSRSGGVVIKFRCNFRYENFSFYEPMADTQTLQLSPQGSPSPPSPSPFTTKNSPESTYHGKSSKLQAVIAKCVVPIVVFFGLLIFICIYLGVRKPTKHFQSEAKADKESLLINFDTIRVGTNNFSDANKIGQGGFGRVYKGKLFNEQEVAIKRLCSISGQGDTEFKNEVFLMSRLQHRNLVRLLGFCFEKEERLLVYEFLPNKSLDNFLFDPIKRAHLDWKTRYKIIEGIARGLLYLHEDSQQRIIHRDLKLSNILLDADLNPKISDFGFARLFNVDQTQVKASKIAGTYGYMAPEYARHGKLSTKLDVFSFGVILLEIVSGQKNGGFRNGENVEHLLSFAWTNWRNGRAANIIDPTLNNALGDEIVRCIHIGLLCVQEKVADRPTMASVVLMLDSHSFALPVPLQPAYFMITRCSSVYQFSEFGCLETGSNEQKIDSADASTNEASISSLYPR* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2355 676 ProSiteProfiles Gnk2-homologous domain profile. 135 244 IPR002902 -
Vra8g2355 676 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2355 676 SUPERFAMILY Protein kinase-like (PK-like) 330 616 IPR011009 -
Vra8g2355 676 Pfam Salt stress response/antifungal 145 241 IPR002902 -
Vra8g2355 676 Pfam Salt stress response/antifungal 31 125 IPR002902 -
Vra8g2355 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 647 - -
Vra8g2355 676 Pfam Protein tyrosine and serine/threonine kinase 350 613 IPR001245 GO:0004672|GO:0006468
Vra8g2355 676 CDD STKc_IRAK 352 617 - -
Vra8g2355 676 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vra8g2355 676 Gene3D Phosphorylase Kinase; domain 1 311 421 - -
Vra8g2355 676 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2355 676 Gene3D - 134 244 IPR038408 -
Vra8g2355 676 Gene3D - 25 128 IPR038408 -
Vra8g2355 676 Gene3D Transferase(Phosphotransferase) domain 1 422 622 - -
Vra8g2355 676 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Vra8g2355 676 MobiDBLite consensus disorder prediction 254 279 - -
Vra8g2355 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vra8g2355 676 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2355 Vra-Chr8 41783260 41786670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2355 1 633 Receptor kinase-like Gene Family AT4G21410 45.152 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2355 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2355 - - gmx:100790058 1073.54