Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2354 ATGTTCATGTTCACTCTTTCTATCAACAATAAATCTTCCATGACTGCCTTACTCCGATCGACAACAGTGGCCATGGTTTCAAGAATGTCCGGATTCCTTTGTATGCTTGTCATACTCCTAATTATATGCCAATCCTATGCCCAACCAAGTTTCTTATACCACTTCTGTATGAATGACAAGGGTAATTACACTGCTAACGGCACCTACCACAACAATCTCAATACCCTTTTGTCCAACCTCTCTTCAAACACAGATATTGACTATGGCTTCTACAACTTTTCGCTTGGCCAAGATGGTGACAAAGTAAACGCAATTGGGCTGTGCAGAGGAGATGTTAAGGCAGAAGCTTGCCGTAGATGCTTGAATGATTCAAAAGTCCTTCTCCCGCAGCGGTGTCCAAATCAGAAGGAGGCAATTGGTTGGTATGACAATTGCATGTTACGCTATTCCAACCGCTCACTGTTCAACACCATGGAAACCGCACCTAGTTTCTTTATGTGGAACCTTGAAAATGCAACAGACTTTGATCAATTCAATCAAGCGTTGAGGAACTTGCTAGACAGCCTCGTAGGCCATGCTACACCAGGGGACTCCAAGCGTAAGGTTGCTGCTGCAAATATTTCAGGACCAGCCTTTCAGAATATATTTGCTCTTGTGCAGTGTACACCTGACTTGTCAGAACGAGATTGCACCGAATGCTTGAGTGGGGTTATCGCAGAACTTCCACAATGTTGTGATGGCAAGAAAGGTGGTAGAATTGTAAGGCCTAGTTGTAACTTCAGATATGAGACATACAGCTTCTATGATCCTACCAATGTTGAAATACCAGAAGCAACACCACCACCACCACCACCAGCACCAACACCAGCACCAAATGTGTCTGCTCTTCCTCCTCCTCCGATAGATACCTTGTCTACAGAAGGAAAGAGCAACACTTCTCTAACTGTAATAGCAATAGTTGTGCCAATAGCCTTTGTCACACTAGTAATTCTTATGTGCATCTGTTTAAGAACGAGGAAGTCACGGAAACAGATTGAAGTTCAAGCTTCAAATGCTGATGAAATCAAATCAATAGAGACATTGCATTTGGACTTATCCACAATCATGACTGCTACAAACAACTTTTCTGATGCAAATAGGCTAGGAGAAGGAGGATTTGGACCCGTTTACAAGGGTAAGCTATCCAATGGTCAGGATGTTGCAGTCAAAAGGTTGTCCAAGAACTCCCTCCAAGGAGAAATTGAGTTTAAGAGTGAGGTGATGTTAGTGGCCAAACTTCAGCACCGAAATTTAGTTAAGCTGATAGGATATTGCTTGGAAAGAAGAGAAAGGCTATTGGTGTATGAATTTGTTCCCAACAAAAGCCTCGACTTCTTCATATTTGATGAAGTTGGGCGGGCACAATTGGATTGGGAAAAGCGACACAAAATTATAACAGGCATAGCTAGAGGACTTCTTTATCTTCACGAGGATTCACGTTTGACGATCATTCACCGTGATCTCAAAGCAAGTAACATTCTTTTAGATGCCGAGATGCATCCAAAGATATCAGATTTTGGCATGGCAAGATTATTTGAAGTGGATCAAACTCAGGACAATACTAGTAGAATTGTTGGAACCTATGGATATATGGCACCAGAGTATGTCTTCTATGGACAATTCTCAGTGAAATCTGATGTTTATAGTTTTGGCATATTGGTTCTTGAGATTGTAAGTGGCCAGAAAAACAGTTGGGTGCAAAGAGGAGAGAATGAAGGGGATCTTCTAACCTATATATGGCAAAACTGGAGGGAAGGGACAGTGTTAAAAACTATTGATCCAACAATTGCGGACAGTCGGAGAAATGAAATAGTGAGATTTATCCACATTGCGTTGCTTTGTGTTCAGGAAAAAGTGGCTGATAGACCAACCATGGCCTCTATTGTGCTCATGCTTAGCAGCCACTCTGTTTCGCTTCAATTGCCCTCTCAGCCTGCTTTCTCCGTTGTAAGCAGAAATTTCTCAGTCATTCAATCAGAAGATTATGATCCTGAGGCAAGTGCATAG 2046 0.4218 MFMFTLSINNKSSMTALLRSTTVAMVSRMSGFLCMLVILLIICQSYAQPSFLYHFCMNDKGNYTANGTYHNNLNTLLSNLSSNTDIDYGFYNFSLGQDGDKVNAIGLCRGDVKAEACRRCLNDSKVLLPQRCPNQKEAIGWYDNCMLRYSNRSLFNTMETAPSFFMWNLENATDFDQFNQALRNLLDSLVGHATPGDSKRKVAAANISGPAFQNIFALVQCTPDLSERDCTECLSGVIAELPQCCDGKKGGRIVRPSCNFRYETYSFYDPTNVEIPEATPPPPPPAPTPAPNVSALPPPPIDTLSTEGKSNTSLTVIAIVVPIAFVTLVILMCICLRTRKSRKQIEVQASNADEIKSIETLHLDLSTIMTATNNFSDANRLGEGGFGPVYKGKLSNGQDVAVKRLSKNSLQGEIEFKSEVMLVAKLQHRNLVKLIGYCLERRERLLVYEFVPNKSLDFFIFDEVGRAQLDWEKRHKIITGIARGLLYLHEDSRLTIIHRDLKASNILLDAEMHPKISDFGMARLFEVDQTQDNTSRIVGTYGYMAPEYVFYGQFSVKSDVYSFGILVLEIVSGQKNSWVQRGENEGDLLTYIWQNWREGTVLKTIDPTIADSRRNEIVRFIHIALLCVQEKVADRPTMASIVLMLSSHSVSLQLPSQPAFSVVSRNFSVIQSEDYDPEASA* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2354 681 ProSiteProfiles Gnk2-homologous domain profile. 51 154 IPR002902 -
Vra8g2354 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 673 - -
Vra8g2354 681 Pfam Salt stress response/antifungal 171 265 IPR002902 -
Vra8g2354 681 Pfam Salt stress response/antifungal 56 151 IPR002902 -
Vra8g2354 681 SMART serkin_6 375 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2354 681 SUPERFAMILY Protein kinase-like (PK-like) 364 668 IPR011009 -
Vra8g2354 681 Gene3D Phosphorylase Kinase; domain 1 335 450 - -
Vra8g2354 681 CDD STKc_IRAK 381 645 - -
Vra8g2354 681 ProSiteProfiles Gnk2-homologous domain profile. 160 267 IPR002902 -
Vra8g2354 681 ProSiteProfiles Protein kinase domain profile. 375 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2354 681 MobiDBLite consensus disorder prediction 273 307 - -
Vra8g2354 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Vra8g2354 681 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 27 673 - -
Vra8g2354 681 MobiDBLite consensus disorder prediction 275 298 - -
Vra8g2354 681 Pfam Protein tyrosine and serine/threonine kinase 379 643 IPR001245 GO:0004672|GO:0006468
Vra8g2354 681 Gene3D - 48 154 IPR038408 -
Vra8g2354 681 Gene3D - 161 267 IPR038408 -
Vra8g2354 681 Gene3D Transferase(Phosphotransferase) domain 1 451 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2354 Vra-Chr8 41778272 41781677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2354 47 660 Receptor kinase-like Gene Family AT4G38830 50.962 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2354 PK_Tyr_Ser-Thr 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2354 - - gmx:113000773 987.252