Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2353 ATGTTCCTCTCCAACTCCATCAACCATGTTACCTTTCTACTGTTCCTCTCTCTGTTCGTAATTGAACCGTTTTGTTCCTCTGCAGCTCCGGTTTACAATTACTGCCCAACCAACGCATCCTACAATTCCACCGCAACATTCGAAACTAATCTCAAATTCCTCCTCGAATCTCTCGTCTCCAACATTTCCCAATCCGACGGCTCCTATTCCTCCGCCATGGGCTTGGGGACCACAAGTGTCGCCAGCGGCTATTTCCTCTGCCGCGGCGACGTCTCCCTCGCCACGTGTAACGACTGCATAACCACCTCCGTCACCGAAATAACACAACTCTGCCCCAACAAAACAGAGTCCATAATATGGTACGACGAGTGCACGCTCCGTTTCACCAACACCTACTTTGATCCCGCCAGCACCGAACCGGGAGCTAGCTTATGGAACGGTGAAAATATCTCCGCCTCCGACTTGGGCAGCTTTAACCGCACGTTGTTCGGCTTGTTGGACGATTTGGTGGAAGAAACTGCGAATTCTAACTCGGCGAGGAAATTCGCCACCGGCGATATAGAATTCGCCGGATCCTCGGCTCAGAGAAGGGTGTACGCCCTGACGGAGTGCGAGCCAAGCTTAACGAGTAGTGGTTGTGAAGAGTGTTTGCAAAACGCCATTTCTACTCTACCCTCATGCTGCGAAGGAAAAGAGGGAGCAAGGGCTCTGCTTGCGTGGTGCAATGTTAGATACGAATTGTTTCAGTTTTACAATACCAACGCCACGTCACCACCCTCATCAGGAAATAACCATTATGCATTACGAGTAATCTTCATTGTTGCCCTTGTTATTGTGTCGATAATTCTCTTATGTGGTGTCTGCTATTTCATATTCAAAAGATCAAGGAGGAAATACAACACTCTTCTAAGGGAAAATTTTGGAGAAGAAAGTTCCACTTTGGAATCGTTACATTTTGATTTGGCCACAATAGAAGTTGCCACAAAGAAGTTTTCACATGAAAACAGGATAGGTGAAGGTGGATTTGGAGATGTTTACAAGGGTATCCTTCCAGATGGACGAGAAATAGCAGTTAAAAAACTTTCACATAGTTCAGGCCAAGGTGCAGCTGAATTTAAGAATGAGATTTTGTTAATAGCAAAACTTCAACACAAAAATTTAGTGACATTGTTAGGATTTTGTTTGGAAGCTGAAGAAAAGATGCTTATTTATGAATTTGTGCCTAATAAAAGCCTAGACTACTTTCTATTTGATCCATACAAAAGTAGTCAAATGAATTGGTCGGAACGATATAAAATTATTCAAGGAATTACACAAGGAATTTTATATTTACATGAACATTCACGATTGAAAGTTATACATCGTGATCTCAAACCTAGCAATATATTATTGGATGTGGACATGAATGTAAAGATATCAGATTTTGGAATGGCAAGAATTGTTGGTGTAGATCAATATCAAAGAAACACAAATAGAATAGTGGGAACATATGGATATATGTCACCAGAATATGCAATGTATGGACAATTTTCAGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAATAATAGAAATAGTTAGTGCAAAAAAGAATGCCAGACATGTTTTTTCAGATGATGATGACCTTTTGAGCTATGCTTGGGATCAATGGAGGGATCGGACACCATTAAACATCTTAGACAAAAATATTAAGGAATCTTGCAATCAGAGTGAAGTCATAAAATGCATCCAAATAGGTTTATTATGTGTGCAAGAGAAGCCACATGACAGACCTACAATGGCACAGGTTGTTTCATATCTCGGTAGCCCTTTATCCGAGTTGCCATTTCCTGAAAAACCCATAAATTCTAATCAAAGTGGACTAGTTCAAAGGATGGTGGTAGGAGGATCCAGTTCAGGTTCTACAAAATCGATAAATGAAATGTCTGTGAGCATATTTATCCCTCGGTAG 1953 0.4122 MFLSNSINHVTFLLFLSLFVIEPFCSSAAPVYNYCPTNASYNSTATFETNLKFLLESLVSNISQSDGSYSSAMGLGTTSVASGYFLCRGDVSLATCNDCITTSVTEITQLCPNKTESIIWYDECTLRFTNTYFDPASTEPGASLWNGENISASDLGSFNRTLFGLLDDLVEETANSNSARKFATGDIEFAGSSAQRRVYALTECEPSLTSSGCEECLQNAISTLPSCCEGKEGARALLAWCNVRYELFQFYNTNATSPPSSGNNHYALRVIFIVALVIVSIILLCGVCYFIFKRSRRKYNTLLRENFGEESSTLESLHFDLATIEVATKKFSHENRIGEGGFGDVYKGILPDGREIAVKKLSHSSGQGAAEFKNEILLIAKLQHKNLVTLLGFCLEAEEKMLIYEFVPNKSLDYFLFDPYKSSQMNWSERYKIIQGITQGILYLHEHSRLKVIHRDLKPSNILLDVDMNVKISDFGMARIVGVDQYQRNTNRIVGTYGYMSPEYAMYGQFSEKSDVFSFGVIIIEIVSAKKNARHVFSDDDDLLSYAWDQWRDRTPLNILDKNIKESCNQSEVIKCIQIGLLCVQEKPHDRPTMAQVVSYLGSPLSELPFPEKPINSNQSGLVQRMVVGGSSSGSTKSINEMSVSIFIPR* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2353 650 SUPERFAMILY Protein kinase-like (PK-like) 313 614 IPR011009 -
Vra8g2353 650 SMART serkin_6 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2353 650 Gene3D Transferase(Phosphotransferase) domain 1 407 608 - -
Vra8g2353 650 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 11 650 - -
Vra8g2353 650 Gene3D Phosphorylase Kinase; domain 1 294 406 - -
Vra8g2353 650 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Vra8g2353 650 Pfam Salt stress response/antifungal 35 130 IPR002902 -
Vra8g2353 650 Pfam Salt stress response/antifungal 155 246 IPR002902 -
Vra8g2353 650 CDD STKc_IRAK 337 601 - -
Vra8g2353 650 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Vra8g2353 650 ProSiteProfiles Gnk2-homologous domain profile. 138 250 IPR002902 -
Vra8g2353 650 Pfam Protein tyrosine and serine/threonine kinase 334 601 IPR001245 GO:0004672|GO:0006468
Vra8g2353 650 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 650 - -
Vra8g2353 650 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2353 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Vra8g2353 650 Gene3D - 141 250 IPR038408 -
Vra8g2353 650 Gene3D - 27 133 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2353 Vra-Chr8 41767032 41771022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2353 12 650 Receptor kinase-like Gene Family AT4G05200 41.874 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2353 PK_Tyr_Ser-Thr 6.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2353 - - var:108324781 1248.8