Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2352 ATGTTTTGGCGCAACATGTTCCTCTCCACCTCCACCAACCATGTTACCTTTCTTCTGTTCCTGTCTCTCTTCGTAATCGAACCGTTTTGTTCCTCTTCAGCTCCGGTTTACAATTACTGTCCAACCAACGCATCTTACAATTCCACCGCAACATTCGAAAATAATCTTAAATTCCTCCTCCAATCTCTTGTCTCCAACGTTTCCGAATCCGACGGCTCCTATTCCACCTTCATGGGCTTGGGGACCGCAAATGTCGCCAGTGGCTCTTTACTCTGCCGCGGCGACGTCTCCCTCGCCACGTGTAACGACTGCATAATCACCGCCGCCACCGAAGTAACACAACTCTGCCCCAACAAAACAGAGTCCATTATATGGTACGACGAGTGCATGATCCGTTTCACCAACACTTACTTCAACCCCGTCAGCATCGAACCGGGAGCCAGCTTGTCGAACGATGAAAACATCTCCGCCTCCGACTCGGTCAGCTTTAACAGCACGTTGTTCGGCTTGTTGGACGATTTGGTGGAAGAGACTGCGAGTTCTGACTCGGTGAGGAAATTCGCCACCGGCGATAGAGAATTCGCCGGATCCTCAGCTCAGAGAAGGGTGTACGCCCTGACGGAGTGCGATCCGGAATTAACGAATAGTAATTGTGAGCAGTGTTTGCAAAACGCCATTTCAACTCTTCCGTCGTGCTGCGAAGGAAAACAGGGCGCGAGGGCTCTGCTTGCGTGGTGCAATGTTAGATACGAATTGTTTCAGTTTTACAATGAGAGCGCCACGTCAGCACCCTCATCAGGAAATAACAATTATGTAATACGAGTAATCTTAATCGTTGCCCTGGTTATTGTGTCGATAATTCTCTTATGCGGTGTCTGCTATTTCATATTGAAAAGATCAAAGAAGAGATACAACACTCTTCTAAGGGAAAATTTTGGAGAAGAAAGTTCCACTTTGGAATCGTTACAATTTGATTTGGCCACAGTGGAAGTTGCCACAAAGAAGTTTTCACATGAAAACAGGATAGGTGAAGGTGGATTTGGAGATGTTTATAAGGGTATCCTTCCAGATGGACGAGAAATAGCAGTTAAAAAACTTTCACATAGTTCAGGCCAAGGTGCAGCAGAATTCAAGAATGAGATTTTGTTAATAGCAAAACTTCAACATAAAAATTTAGTGACATTATTAGGATTTTGTTTGGAAGCTGAAGAAAAGATGCTTATTTATGAATTTGTGCCTAATAAAAGCCTGGACTACCTTCTCTTTGATCCATACAAAAGTAATCAAATGACCTGGTCAGACCGTTACAGAATTATACAAGGAATTACACAAGGAATTTTATATCTGCATGAACATTCACGATTAAAAGTTATACATCGTGATCTTAAACCTAGTAATATATTATTAGATAATGATATGAATGCTAAGATTTCAGATTTTGGATTAGCAAGAATGGTTGGCGTAGATCAATATCAAAGAGAAACAAAGAGAATTGTGGGAACATATGGATATATGTCACCAGAATATGCCATGCATGGACAATTTTCAGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAATATTAGAAATAGTTAGTGCAAAAAAGAATGCAAGAGAAGTTTTCTCAGATGATGATGACCTCTTGAGCTATGCTTGGGATCAATGGAGGGATCGGACACCATTAAACATATTAGACAAAAATATTAAGGAATCTTGCAATCACAGTGAAGTCATAAAATGCATCCAAATAGGTTTATTATGTGTACAAGAGAAGCCTCATGACAGACCTACAATGACACAAGTTGTTTCATATCTCAATAGCTCTTTATCTGAGTTGCCATTTCCTGAAAAACCCATAAACTCTAATCAAAGTGGACTAGTTCAAAAGATGTTAATTGGAGGATCCAGTTCAGGTTCTGCACAAACAATAAATGAAATGTCTGTGAGCATATTCATCCCTCGTTAG 1968 0.409 MFWRNMFLSTSTNHVTFLLFLSLFVIEPFCSSSAPVYNYCPTNASYNSTATFENNLKFLLQSLVSNVSESDGSYSTFMGLGTANVASGSLLCRGDVSLATCNDCIITAATEVTQLCPNKTESIIWYDECMIRFTNTYFNPVSIEPGASLSNDENISASDSVSFNSTLFGLLDDLVEETASSDSVRKFATGDREFAGSSAQRRVYALTECDPELTNSNCEQCLQNAISTLPSCCEGKQGARALLAWCNVRYELFQFYNESATSAPSSGNNNYVIRVILIVALVIVSIILLCGVCYFILKRSKKRYNTLLRENFGEESSTLESLQFDLATVEVATKKFSHENRIGEGGFGDVYKGILPDGREIAVKKLSHSSGQGAAEFKNEILLIAKLQHKNLVTLLGFCLEAEEKMLIYEFVPNKSLDYLLFDPYKSNQMTWSDRYRIIQGITQGILYLHEHSRLKVIHRDLKPSNILLDNDMNAKISDFGLARMVGVDQYQRETKRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIILEIVSAKKNAREVFSDDDDLLSYAWDQWRDRTPLNILDKNIKESCNHSEVIKCIQIGLLCVQEKPHDRPTMTQVVSYLNSSLSELPFPEKPINSNQSGLVQKMLIGGSSSGSAQTINEMSVSIFIPR* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2352 655 SUPERFAMILY Protein kinase-like (PK-like) 319 620 IPR011009 -
Vra8g2352 655 ProSiteProfiles Gnk2-homologous domain profile. 143 255 IPR002902 -
Vra8g2352 655 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Vra8g2352 655 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 655 - -
Vra8g2352 655 Gene3D Transferase(Phosphotransferase) domain 1 412 617 - -
Vra8g2352 655 Gene3D Phosphorylase Kinase; domain 1 298 411 - -
Vra8g2352 655 ProSiteProfiles Protein kinase domain profile. 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2352 655 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Vra8g2352 655 Pfam Salt stress response/antifungal 158 251 IPR002902 -
Vra8g2352 655 Gene3D - 33 138 IPR038408 -
Vra8g2352 655 Gene3D - 147 255 IPR038408 -
Vra8g2352 655 CDD STKc_IRAK 342 607 - -
Vra8g2352 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Vra8g2352 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 655 - -
Vra8g2352 655 ProSitePatterns Protein kinases ATP-binding region signature. 342 365 IPR017441 GO:0005524
Vra8g2352 655 Pfam Protein tyrosine and serine/threonine kinase 339 606 IPR001245 GO:0004672|GO:0006468
Vra8g2352 655 SMART serkin_6 336 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2352 Vra-Chr8 41757955 41761946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2352 17 655 Receptor kinase-like Gene Family AT4G05200 41.935 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2352 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2352 - - var:108324781 1164.83