Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2351 ATGCTACCCTCCAACTTCTGTACAACCTCGTTAACACTTCAATTACTATGTCTGTTATGTATGCTTTTTCTTGCATCTGCATCAGGAGCCATTTACAGTGCCCACTACTGCAGCAATGAAACCTTTTACTCACCCAACACCAAATTTCAATCCAACTTGAATACCCTCCTCTCTTCTCTTGTTTCAAACTCCTCCCTTCCCTCCAACAGCGGTTTCCTCCGAACCTCCGTCGACGAGATCGACGGCCGTTTCCTCTGCCGCGGCGACGTCAACGCGACCGTCTGCCATGGCTGCGTCGCCGCAGCAGCAGCCAACATAACTCGCCTATGTCCCAACGATACCGAGTCCTACATCTGGTACGACGAGTGTACGCTAATCTACTCCAACAGCACCTTCAACAATGATGACATAGTTCCCGGGTTTCCCCTCAATGACGAAGGAAGCACCGTTAACTCAAATCAGGACCACTTCAACCAATTACTGTCGAACTTGTTAAACAGTTTAGAGGGAAAAGCTTTGGAGAGTTCCATGGGAGAGAAGAAATTCGCCGCAGGTGCGGTGAGTGTGACGAGCGCGCAAACGCTGTATGGAATGGCGCAGTGCGAGCCAGACTCAACGAGTGGTCGTTGTGAGGCGTGCTTTCGAAGCGCAATTGCAGCTATTCCATCGTGTTGCAACGGAAGCGGAGGAGCAAGACTTCTGCTTCCCATATGTACCATCAGATACCAACTGCATCCCTTTCTGTACAATTCCACCGTGCTCATTCCTTCTTCAGGTAGCAAAAGTACATTGATGATTGTGGCAATTGTTCTCCCGATTGCTATTTTGGCGCTGTTCTTGTTCATAGGATGCTGTTGGTGGCGAAGAAGGCAAAGAGAAAACCGTGAGGATGTCCAGGAAGTGAATGATAGCATTAGGAGATATTTGACTGAGGAAGAGTCTTTGCATTTTGACTTGGCTACAGTAGAAGCAGCCACAAATAGTTTCTCAGATGAGATGAAGATAGGAGAAGGTGGATTTGGTGCGGTTTATAAGGGTACCTTTCCTAATGGAGAAGAGATAGCTGTGAAGAGGCTATCAAGAACCTCCCTTCAAGGTGACAGAGAATTCAAGAACGAGGTTCTACTTATTGCTCAGCTTCAACACAAAAATTTAGTTAGACTGTTAGGCTTTTGTATGGAGACAACGGAGAGGATACTGGTTTACGAGTTTATCCAAAATTCCAGCCTCGACCACTTTCTATTTGGTCACGAAGACCATGGAGTGCTAGACTGGGCAAGACGTTACAAAATTATAGTTGGGATTGTACGTGGAATTCAATATCTCCATGAAGATTCTCGGCTAAAAGTAATACACCGCGATCTCAAGGCATCTAATGTTTTACTAGATGCCGATATGAATCCAAAGATTTCCGACTTTGGAATGGCAAAGGTTTTCCATGGAGATCGAAGTCAAGAAAATACAAGAACAGGAAGGGTAGTTGGAACTTTTGGTTACATGTCTCCCGAATATGCCATGCATGGGAAATTCTCAGAGAAATCCGACGTGTTCAGTTTTGGAGTCTTGGTTTTGGAGATCCTCAGTGGCAAGAAGAACACAAGTTATTATCGATCACATGAGGATAATGATGACCTTTTGAGCTTTGCTTGGAAGAATTGGATAGATCGAACACCGTTCCAGATATTGGATCCAAAACTGAGAGGTTCTTATTCTAGAAATGAAGTTCAGAGATGCATCCATATTGCTTTATTATGCGTTCAAGAAAACCCAGTTGAGAGACCATCAATGGCGACAATAATGCTTGCATTGAACGCTTATTCAGTAACTTTAGGGTTGCCCAGACAGCCAGCATCTCTTGTGAGAGGAAGAGTAACAACAGAGAGATTAAGACAGCAGCATGATTCTGATCAGTCCAACAGTTCTTCAATCCCTTATTCTGCTGCTGATTCATTAATCACTCAAGTATATCCTCGTTAA 1977 0.4466 MLPSNFCTTSLTLQLLCLLCMLFLASASGAIYSAHYCSNETFYSPNTKFQSNLNTLLSSLVSNSSLPSNSGFLRTSVDEIDGRFLCRGDVNATVCHGCVAAAAANITRLCPNDTESYIWYDECTLIYSNSTFNNDDIVPGFPLNDEGSTVNSNQDHFNQLLSNLLNSLEGKALESSMGEKKFAAGAVSVTSAQTLYGMAQCEPDSTSGRCEACFRSAIAAIPSCCNGSGGARLLLPICTIRYQLHPFLYNSTVLIPSSGSKSTLMIVAIVLPIAILALFLFIGCCWWRRRQRENREDVQEVNDSIRRYLTEEESLHFDLATVEAATNSFSDEMKIGEGGFGAVYKGTFPNGEEIAVKRLSRTSLQGDREFKNEVLLIAQLQHKNLVRLLGFCMETTERILVYEFIQNSSLDHFLFGHEDHGVLDWARRYKIIVGIVRGIQYLHEDSRLKVIHRDLKASNVLLDADMNPKISDFGMAKVFHGDRSQENTRTGRVVGTFGYMSPEYAMHGKFSEKSDVFSFGVLVLEILSGKKNTSYYRSHEDNDDLLSFAWKNWIDRTPFQILDPKLRGSYSRNEVQRCIHIALLCVQENPVERPSMATIMLALNAYSVTLGLPRQPASLVRGRVTTERLRQQHDSDQSNSSSIPYSAADSLITQVYPR* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2351 658 Pfam Protein tyrosine and serine/threonine kinase 333 601 IPR001245 GO:0004672|GO:0006468
Vra8g2351 658 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 657 - -
Vra8g2351 658 SMART serkin_6 329 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2351 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vra8g2351 658 CDD STKc_IRAK 335 599 - -
Vra8g2351 658 ProSiteProfiles Gnk2-homologous domain profile. 137 247 IPR002902 -
Vra8g2351 658 Pfam Salt stress response/antifungal 37 129 IPR002902 -
Vra8g2351 658 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Vra8g2351 658 Gene3D - 30 132 IPR038408 -
Vra8g2351 658 Gene3D - 144 247 IPR038408 -
Vra8g2351 658 ProSiteProfiles Protein kinase domain profile. 329 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2351 658 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Vra8g2351 658 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 12 657 - -
Vra8g2351 658 Gene3D Transferase(Phosphotransferase) domain 1 405 610 - -
Vra8g2351 658 Gene3D Phosphorylase Kinase; domain 1 289 404 - -
Vra8g2351 658 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
Vra8g2351 658 SUPERFAMILY Protein kinase-like (PK-like) 314 611 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2351 Vra-Chr8 41743315 41749236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2351 18 658 Receptor kinase-like Gene Family AT4G05200 46.349 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2351 PK_Tyr_Ser-Thr 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2351 - - ccaj:109806163 927.546