Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2349 ATGGCCCTTTTTTCCTTGAAACATGCTCTCTTCTTCATGTTTCTTATCTTTACCACTGTCCACGCATCAGATGACCCTATATTCCTTCGCCAAAATTGCACAACCAACGAAACCTTCACCCCCAACACCACTTTCCAAGTCAACCTCCGCACCCTCTTGTCTTCTCTATCTTCCCTTGCCACCCGAAACACCCAGTTTCGCAACGCCACCGTATCCGGCGGAAGCCCTTCTGACTCGGTCTACGGTCTCTTCCTCTGCCGCGGCGACGTGCCCCCTCAACTCTGTCAACAGTGTGTCCTGAACGCGACACAAAGACTCGGCAACCAAAACACAGATACATGCAAGTTTTCGAAAAGCGCTATAGTTTGGTATGACGAATGTTTGGTTCGATATTCCAACAGGGACTTCTTCTCCACGGTGGAGACAAGGCCCAGAATGCGTCTGCGGAACACCGCCAACATTTCCGACACTAAAAGCTTCTTGCGCTTGTTGTACACCACCTTGAATGAAACCGCAGACGAGGCAGCGAATTCTTCTAATGGTGCTAAGTTATACGCCACAAAACAAGCTAATATATCTGGGTTTCAGACCCTCTATTGTCTGACTCAGTGCACACCGGATTTGTCACCCCAAGATTGCAGAAGGTGTCTCAGTGATGTGATAGGGGACCTTTCATGGTGTTGTCCTGGAAGCCAAGGAGGAAGAGTTTTGTATCCAAGTTGTAACTTTAGGTATGAGCTGTATCCTTTCTACAGAATGGATTCTCCGGCACCCGAAGCAAATGTTAGTCCTACAACTTCTACGATAAAAAATGGAAAAAACAATATCTCTATAATTCTGGCTATTGCCGTGCCAATTGTCGTTGCGGTGCTACTTTTCATTGTTGGCGTCTGCTTCCTACGCAAGAGGGCAAGCTATAAATACAATAACTCTTTTGGCCAGGATTCAATTGTGGAAGGTCTTAGCGATGGGGACTCCTTGCAATTTGACCTGGCTACGATTGAAGCAGCCACGAACAGATTCTCGGATGAAAACAAGATTGGCAAAGGTGGATTTGGGGTGGTTTATAAGGGTGTCCTACCTGACGGACAGGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCCGCCCTTGTGGCCAAACTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGCCAGGAAAAGATTCTTATCTATGAATACATACCAAACAAAAGCCTTGATTACTTTCTATTCAATTCTATGAAGCAAAGAGAGTTAGATTGGTCACAACGCTACAAGATTATAGTTGGCATTGCTAGAGGAATTCTTTATATACATGAAGATTCTCAACTTAGAATTGTACACCGTGATCTCAAAGCTAGCAATGTTTTATTAGATGAAAACATGAACCCTAAGATTTCTGATTTTGGCATGGCAAAGATTTTCCAGGCAGACCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACTTATGGTTACATGTCTCCGGAATATGCAATGCGTGGTCAGTTTTCCATGAAATCGGATGTGTTCAGCTTTGGTGTCTTGGTCTTGGAGATTGTGAGTGGCAAGAAGAATACTGATTTTTATCAATCGAATCACGCTGATGACCTCTTAATCTTTGCTTGGAAGAAATGGACAGAGCAAACACCAATGGAGTTTGTGGATCCAACTCTGAGAGGTTCTTGTTCGAGAAATGAAGTAAACAGATGCATCCACATTGGTTTATTATGCGTTCAGGAAAATCCATCAGACCGACCATCAATGTCCACAATTGCACTTATGCTGAACAGTTATTCAGTGACCATGTCAATGCCACGACAACCAGCATCTTTCCTGCGTGGAAGAAATCATAACAGGCTTAACCGAGAGCTTGACTCTGATCAGTCTACCACCGATCAATCTACCTCCTGTTCAATTCCATACTCTGTGAATGAAGTATCCATCACTGAAGTATACCCTCGCTAA 2016 0.442 MALFSLKHALFFMFLIFTTVHASDDPIFLRQNCTTNETFTPNTTFQVNLRTLLSSLSSLATRNTQFRNATVSGGSPSDSVYGLFLCRGDVPPQLCQQCVLNATQRLGNQNTDTCKFSKSAIVWYDECLVRYSNRDFFSTVETRPRMRLRNTANISDTKSFLRLLYTTLNETADEAANSSNGAKLYATKQANISGFQTLYCLTQCTPDLSPQDCRRCLSDVIGDLSWCCPGSQGGRVLYPSCNFRYELYPFYRMDSPAPEANVSPTTSTIKNGKNNISIILAIAVPIVVAVLLFIVGVCFLRKRASYKYNNSFGQDSIVEGLSDGDSLQFDLATIEAATNRFSDENKIGKGGFGVVYKGVLPDGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDYFLFNSMKQRELDWSQRYKIIVGIARGILYIHEDSQLRIVHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSMKSDVFSFGVLVLEIVSGKKNTDFYQSNHADDLLIFAWKKWTEQTPMEFVDPTLRGSCSRNEVNRCIHIGLLCVQENPSDRPSMSTIALMLNSYSVTMSMPRQPASFLRGRNHNRLNRELDSDQSTTDQSTSCSIPYSVNEVSITEVYPR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2349 671 Gene3D - 26 136 IPR038408 -
Vra8g2349 671 Gene3D - 144 250 IPR038408 -
Vra8g2349 671 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Vra8g2349 671 Gene3D Phosphorylase Kinase; domain 1 304 416 - -
Vra8g2349 671 Pfam Protein tyrosine and serine/threonine kinase 344 609 IPR001245 GO:0004672|GO:0006468
Vra8g2349 671 SUPERFAMILY Protein kinase-like (PK-like) 327 637 IPR011009 -
Vra8g2349 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 670 - -
Vra8g2349 671 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vra8g2349 671 Pfam Salt stress response/antifungal 33 133 IPR002902 -
Vra8g2349 671 Pfam Salt stress response/antifungal 153 248 IPR002902 -
Vra8g2349 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vra8g2349 671 Gene3D Transferase(Phosphotransferase) domain 1 417 625 - -
Vra8g2349 671 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 24 670 - -
Vra8g2349 671 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2349 671 SMART serkin_6 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2349 671 CDD STKc_IRAK 347 613 - -
Vra8g2349 671 ProSiteProfiles Gnk2-homologous domain profile. 27 136 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2349 Vra-Chr8 41734734 41743084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2349 1 671 Receptor kinase-like Gene Family AT4G05200 50.581 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2349 PK_Tyr_Ser-Thr 4.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2349 - - var:108324780 913.294