Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2348 ATGATTACCAAGTCCAAAAATAGTCTAAAACTGTTCCTTTTTTGCACCCTTGTGCTCACCGTTACAGAAACATCTGCTTCGGTCTTCAACAACGTTAGCTGCTCCATTAATCACACTTTCACTCCAAACAACACCTTCAACGCCAACCTCAACACCCTTCTCTCCCACCTTTCCTCCAATGTCACCAACAACTTTAGATTCTTCAACACAACATCTGGGAAGGGTTCGGACACCGTCTATGGCCTCTACATGTGCCGTGGTGACGTGCCGTTTGCTCTATGCAGAGAGTGTGTGGGTTTCGCGACCCTAACCATAGCCTCGTCGTGTCCGACATCGAAAGAGGCTGTGATTTGGTACAACGAGTGTTTGTTGCGCTACTCTTACAGGTTCTTCTTCTCTAAAATGGACGAGTGGCCAAGGCACCAGGTCAACATCCCATTGGGGGATCCTGTCGTTTTGCACAGTAATGGATTCTACACTGCTTTAGGATCCATTTTCGATGAACTTCCAAATCAAGCAGCACTGGCTCTCAGAGGGTCCAACCCTTATGCTGTTAAGCAAGAAAACGCTTCTGCGAGTGTGACCCTGTATGGCCTCGCTCAGTGCACACCGGACTTGGCTGCTGGAGATTGCAAACGGTGTATCGCCGATGCGGCGGCGGAATTCGCCGTGTCTTGTTGCGGAGGGAGCATAGGGGCAAGTGTTCTGTTTCCCAGTTGCATTGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCGGGAACCTCCGCGCCAACAACGATTAAGGGTTCAGGAAATATTCGCACTGAAGTGATTGCGATAGCCGTTGTCATGGTTGTCGTTTTGGTAATCATTTTTTTCTTTGGCTACTACGGTTTCAACCGCATAAAAGCGAGAAAGAAAAGCAAGGCCAGTGACGACAGAGAAAACTTTGGAGTAGAAATCAGTGTCTTGGAGTCCTTGGAATTTGATTTTGCTACAATTGAAGCAGCGACAAACAAGTTTTCTGAAGACCGCAGGATCGGCAAAGGGGGTTACGGAGAAGTCTACAAGGGAATCCTTCCTAACGGAGAAGAAGTAGCTGTAAAGAGATTGTCAACAAATTCTAAGCAGGGAGCAGAGGAATTCAAGAATGAAGTGTTGTTAATAGCGAAACTTCAACACAAAAATTTGGTGAGGTTAATAGGATTTTGCCAAGAAGACAGAGAGAAAATACTTATCTATGAATATGTTCCTAACAAAAGCCTTGATCACTTTCTATTTGATCGCGCAAGACAGAGAATATTAACTTGGTCAGAGCGGTATAAAATCATTAAAGGAATTGCAAGAGGAATTCTTTATCTTCATGAAGACTCTCGTCTGAAGATTATACATCGTGATATCAAACCAAGCAATGTTCTATTGGACAATGACTTCAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTAGATACAAACCAGATTCAAGGATGTACGAACAGAGTTGTGGGTACATACGGTTACATGCCTCCTGAGTATGCCATGCATGGACACTTTTCTGAAAAGTCTGATGTATTCAGTTTTGGAGTAATGATTCTTGAGATTATCAGTGGAAAGAAGAATTCTTGTTCTTATGAATCATCTCGTGTTGATGATCTCTTGAGTTATGCATGGAACACTTGGAGGGATGTATCACCATTTCAATTGTTGGATCCGAGTGTTCTTGTAGAATCTTACAGTCGAAACGAAGTTGAGAAGTGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCTGATGACAGACCAATAATAGGAACCATCGTTTCATATCTTAGCAACCCTTCGGTTGAAATGCCATTCCCTTTAGAGCCAGCTTTTTTCATGCAAGGCAGAGTAAGAAGACATTCAGCTGAACATCAATCATCTTCAGGTTACTCCATCAATCATTCTTTCTCCACCTCTGTAAATAACATGTCCACCACCGTATTCTTCCCTAGATAG 1989 0.4319 MITKSKNSLKLFLFCTLVLTVTETSASVFNNVSCSINHTFTPNNTFNANLNTLLSHLSSNVTNNFRFFNTTSGKGSDTVYGLYMCRGDVPFALCRECVGFATLTIASSCPTSKEAVIWYNECLLRYSYRFFFSKMDEWPRHQVNIPLGDPVVLHSNGFYTALGSIFDELPNQAALALRGSNPYAVKQENASASVTLYGLAQCTPDLAAGDCKRCIADAAAEFAVSCCGGSIGASVLFPSCIVRYETYPFYQHSGTSAPTTIKGSGNIRTEVIAIAVVMVVVLVIIFFFGYYGFNRIKARKKSKASDDRENFGVEISVLESLEFDFATIEAATNKFSEDRRIGKGGYGEVYKGILPNGEEVAVKRLSTNSKQGAEEFKNEVLLIAKLQHKNLVRLIGFCQEDREKILIYEYVPNKSLDHFLFDRARQRILTWSERYKIIKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNDFNPKISDFGMARMVDTNQIQGCTNRVVGTYGYMPPEYAMHGHFSEKSDVFSFGVMILEIISGKKNSCSYESSRVDDLLSYAWNTWRDVSPFQLLDPSVLVESYSRNEVEKCMQIGLLCVQENPDDRPIIGTIVSYLSNPSVEMPFPLEPAFFMQGRVRRHSAEHQSSSGYSINHSFSTSVNNMSTTVFFPR* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2348 662 Gene3D - 151 249 IPR038408 -
Vra8g2348 662 Gene3D - 27 131 IPR038408 -
Vra8g2348 662 Gene3D Phosphorylase Kinase; domain 1 295 410 - -
Vra8g2348 662 Pfam Salt stress response/antifungal 34 127 IPR002902 -
Vra8g2348 662 Pfam Salt stress response/antifungal 157 247 IPR002902 -
Vra8g2348 662 ProSiteProfiles Gnk2-homologous domain profile. 139 249 IPR002902 -
Vra8g2348 662 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 641 - -
Vra8g2348 662 SUPERFAMILY Protein kinase-like (PK-like) 313 607 IPR011009 -
Vra8g2348 662 Gene3D Transferase(Phosphotransferase) domain 1 411 614 - -
Vra8g2348 662 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vra8g2348 662 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vra8g2348 662 SMART serkin_6 335 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2348 662 CDD STKc_IRAK 341 607 - -
Vra8g2348 662 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2348 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vra8g2348 662 Pfam Protein kinase domain 336 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2348 662 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2348 Vra-Chr8 41729288 41732697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2348 6 662 Receptor kinase-like Gene Family AT4G05200 43.129 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2348 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2348 - - var:108324780 1232.24