Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2347 ATGTGGTTACTCGTCTGCCTTTACTTTTTGGGTTTCTTGTTCAATTTTTCCATAACCGATGCGACTGAAATTCACTACCTGAATCACAGTTGTTCAAGCAACAAAACCTTCGCTCCAAACAGCGCCTACGAATCCAACCTCCGAACCCTCCTTCCGTCCCTATCTTCCCATGCCACCACTGCACAATTCTTCAACACCACTTCGGGTGGTGGAGACGGCAAGGAAACCATTTACGCCTCCTTCATGTGCCGTGGCGATGTCACCAACCACACGTGCCAAGAGTGCATCAGAACTGCAGCCCAAAAAATATCCCAAGTGTGTCCCAACTCCAAAGAAGCCTTAATTTGGTACCACGAATGTTTGGTTCGTTATTCGAACCGTTGTTTTTTCTCCAGCTTGGAGGAGTGGCCAAGGTTCAACTTCATCGATTACAATGTAACGAATTCAACGAACGAGAAGGGAAGCTATGGGTTCTGGTTGTTATCGAAAACGTTGAGTGATGCTGTGGGTGAGGCAGCGAACGCTGGTCCCGCGGGCACCATGAAATTTGCAACAAAAAACGCTACCGTGTTTGGGTCCCAGGAAATTCATACTCTGGTTCAGTGCACGCCAGATCTATCAAGCGAAGATTGCAGTGAGTGTTTGGGTGATATTATGAAAGATATTTCTTTGTGTTGTCTCGGAAGGATCGGTGGAATGGTTCTATATCCCAGCTGTACTTTGATGTTTGGGTCCAGACATTTCTACAGAGACGTTATCGTTGCTTCTAATGCCACACAAGAATCATTAACTTCAGGAAATAAAATGATTTCAGCTGGAGGAATTGTTACGGTTGTCATCTTTCTTGGCTTCACAATGCTAATCTCTTTTCACTGTTATTTCTTATGGAGAAGAGCAAGAAAGCGCAAGTATAAGGTTCTTTTGAAAGAAAACTTTGGTCAAGAAAGTGTCACTATAGAAGGATTACAATTTGATTTGGTCACAATTCAAGCGGCAACAAATAATTTTTCAAATGAAAACAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCATCTTATCTTGTGGACTACATATAGCAGTAAAAAGATTATCACAAAGTTCTACACAAGGTTCCATTGAATTTAAGAATGAGGTTTTATTAATAGCCAAACTGCAACACAGAAACCTCGTGGAGCTAATAGGTTTTTGTCTAGAGGCACAAGAAAAGATACTTGTATACAAATTCATGCACAATGGGAGTCTTGATAAATTTCTATTTGGTTTGATGCTTCATCTTACACTCTTGAAATTTAGCATTTCTTTCATACAGTATATGAGGCTTTTAAATATTTGTTTGCCAACTTTCCTCATTCACTTAGTAAACATTGCAGGTCATCAACAAAAAATGTTGAGTTGGTCCCAACGTTTCAAAATTATAGAAGGAATTGCTCGAGGAATTCTTTATCTACATGAACATTCTCGACTTAAAGTTATACATCGTGATATCAAACCTAGTAATATTTTGTTAGATGAAAATATGAATCCTAAAATATCAGATTTCGGTATGGCTAGAATTATGGAAATAGACCAAGATCGTGCAAAGACCAGACGTATAGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGTTTGGACAATTTTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTTATGATTTTAGAGATTATTACAGGAAAAAAGAACACAAGTTCTCGTGAATCACGTTACATGCCAAATGGACTCATGAGCTATGTTTGGAGAAAATGGATGGACAAAACACCATTGAGCATATTAGACCCATTGTTGGAAGAAAATTATTCTAGAGTTGAAGTAATTAGGTGTATTCATATTAGTTTATTATGTGTTCAAGAAAATAAAAATATTAGACCTACAATAGCAGATATTGTTTCATATCTCGATGGTCGCCACACGATTGAATTTCCATTTCCACAAGAACCAGCATATTTGTTGTTGGACAAGATGGATACAAAAATAGTCTCAAAACACTATTCTATTAATGAGATGTCCGTCAGTACATTTTATGCTCGATAA 2067 0.3807 MWLLVCLYFLGFLFNFSITDATEIHYLNHSCSSNKTFAPNSAYESNLRTLLPSLSSHATTAQFFNTTSGGGDGKETIYASFMCRGDVTNHTCQECIRTAAQKISQVCPNSKEALIWYHECLVRYSNRCFFSSLEEWPRFNFIDYNVTNSTNEKGSYGFWLLSKTLSDAVGEAANAGPAGTMKFATKNATVFGSQEIHTLVQCTPDLSSEDCSECLGDIMKDISLCCLGRIGGMVLYPSCTLMFGSRHFYRDVIVASNATQESLTSGNKMISAGGIVTVVIFLGFTMLISFHCYFLWRRARKRKYKVLLKENFGQESVTIEGLQFDLVTIQAATNNFSNENKIGKGGFGEVYKGILSCGLHIAVKRLSQSSTQGSIEFKNEVLLIAKLQHRNLVELIGFCLEAQEKILVYKFMHNGSLDKFLFGLMLHLTLLKFSISFIQYMRLLNICLPTFLIHLVNIAGHQQKMLSWSQRFKIIEGIARGILYLHEHSRLKVIHRDIKPSNILLDENMNPKISDFGMARIMEIDQDRAKTRRIVGTYGYMSPEYAMFGQFSEKSDVFSFGVMILEIITGKKNTSSRESRYMPNGLMSYVWRKWMDKTPLSILDPLLEENYSRVEVIRCIHISLLCVQENKNIRPTIADIVSYLDGRHTIEFPFPQEPAYLLLDKMDTKIVSKHYSINEMSVSTFYAR* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2347 688 CDD STKc_IRAK 342 646 - -
Vra8g2347 688 ProSiteProfiles Gnk2-homologous domain profile. 140 248 IPR002902 -
Vra8g2347 688 SMART serkin_6 336 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2347 688 Gene3D - 140 248 IPR038408 -
Vra8g2347 688 Gene3D - 23 129 IPR038408 -
Vra8g2347 688 Pfam Protein tyrosine and serine/threonine kinase 338 642 IPR001245 GO:0004672|GO:0006468
Vra8g2347 688 Pfam Salt stress response/antifungal 158 244 IPR002902 -
Vra8g2347 688 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Vra8g2347 688 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 461 673 - -
Vra8g2347 688 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 275 424 - -
Vra8g2347 688 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 255 - -
Vra8g2347 688 SUPERFAMILY Protein kinase-like (PK-like) 319 678 IPR011009 -
Vra8g2347 688 Gene3D Transferase(Phosphotransferase) domain 1 453 651 - -
Vra8g2347 688 Gene3D Phosphorylase Kinase; domain 1 298 411 - -
Vra8g2347 688 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Vra8g2347 688 ProSiteProfiles Protein kinase domain profile. 336 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2347 688 ProSiteProfiles Gnk2-homologous domain profile. 25 129 IPR002902 -
Vra8g2347 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vra8g2347 688 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 255 - -
Vra8g2347 688 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 461 673 - -
Vra8g2347 688 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 275 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2347 Vra-Chr8 41721300 41725520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2347 9 669 Receptor kinase-like Gene Family AT4G05200 42.183 1.08e-176 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2347 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2347 - - gmx:100792162 981.089