Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2346 ATGGCATCCTTTATCTTTTTTATCTCCCTCTGTTTTACTGCGGCTAGAGCTCAGGGACTTCAATATCAGTACCAAGTTTGCTCAAGAAACAAGTTCACTCCCAATAGCACCTTCCAAACGCACCTCACAACCCTATTCTCTTCCTTATCTTCCAAAGCCTCCAACAATGTCCAATTCTTCAACAATACCGTCACCGGGACAAACCCCTCAGACACAGTGTACGGACTATTCATGTGCAGAGGGGACATCCCCTCCGACCTATGTAATAATTGCGTCGGAAACGCGACACAGAGACTGTCCACACACCCAGATTGTTCGTCGTCCATAGAAGCGGTGGTGTATTACGACGAGTGCATAGTTCGGTATTCCAACCTCTCTTTCTTCGGCACCGCAGATATGGAAGTGAGCTCAGGCTATGTCCTGGCGAGTCCCATAAACATGACAAACCAAGAAAGCTTCAAGCGTTTGGTTTATGTGAGCCTGAACGAAACGGCGGATGAGGCAATGAGTTCAGGTAGTGACGGTAAGAAGTTCGCGACAAAGGAAACAGACATAGATATATTTCAGAAGCTATATTGTCTTGCACAGTGCACGCCGGACCTGTCTCCGAGAGATTGCAGAAGCTGTCTGAACAGTTTGATAAATTCGGATCTTCCACGGTGCTGTGCAGGGAGGCAGGGAGGAAGAGTTTTATATCCTAACTGCGTCATCAGGTTTGAAATTTACCCTTTTTATCGTTCTCTTGGTTCGGCTCCTACGCCAACACCGCCGCCGCCGAAATTGGGAGAAAATAATTCGAGTAGATCAAGAACAATTATCTTAGTTGTTGTACCCATTGTTAGTTTGGCAATTCTCTCTGCTTTTTGCTACTATTTCTTAAGGAGAAGAGCAAGAAAGAGGTCAAAGCATCTTCTTAAAGAAAACTTTGGTGAAGAAAGCTCCATTCTAGAAGGCTTGCAATTTGACTTGTCTACTGTTAAATTAGCAACAAATAATTTTTCAAATGAGAGTGAGATTGGTAAAGGTGGATTTGGAGAGGTTTATAAGGGCATTCTTCCGGATGGACGACATATAGCCGTTAAAAGACTTTCAATTGGTTCCAAACAAGGTTCAGTTGAATTTAAAAATGAGATTTTGTTGATAGCTAAGTTACAACATAGGAATCTTGTGGCATTCATGGGATTTTGTTTAGAAGAGCAAGAAAAGATCCTTATTTATGAGTACGTGCCAAATCATAGTCTGGATTACCTGTTATTTGGTACCGAACAAGAAAAGTTAAATTGGCATCATCGTTATAAAATTATAAAAGGAACTGCGGCAGGAATTCTTTATCTACATGATTATTCTCGACTTAAAATTATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGCTTGGCTAGAATTTTTGACGTTGATCAAAATCGTGCTGAAACTGATCGAATTGTTGGAACTTATGGTTATATGTCTCCTGAATATGCAATGCTTGGACAATTTTCTGAAAAGTCTGATGTTTTTAGTTTTGGAATTATAGTTCTTGAGATTATTACGGGTAAAAAAAATGCTCATTCATATGAATCCCACCGCATGGAAGAAGGTCTCATGACTGAGGTGTGGAGAGAATGGAAGAATGAAAGACCAATGGGTATATTGGATCAAAATATGAAAGAAAATTATAGTGAAAGTGAAGTTGTTAGATGCCTTCAAATTGGTTTATTATGTGTTCAAGAGAATCCAAATATTAGACCTACGATGGGAAGAGTAGTTTCCTATCTTAATAATCATTCATTAGAATTGCCATCACCTCAAGAACCTGCATTTTTCTCACACGGAATAGATAAAAGAGCTATGCAGCAAGGATCAAGTTCCAGCTTTTCTGCAAACAGTTCCATGCCATTCTCTGTCAACGAGATGTCTACTAGTAATTTTTATCCTCGATAA 1977 0.3945 MASFIFFISLCFTAARAQGLQYQYQVCSRNKFTPNSTFQTHLTTLFSSLSSKASNNVQFFNNTVTGTNPSDTVYGLFMCRGDIPSDLCNNCVGNATQRLSTHPDCSSSIEAVVYYDECIVRYSNLSFFGTADMEVSSGYVLASPINMTNQESFKRLVYVSLNETADEAMSSGSDGKKFATKETDIDIFQKLYCLAQCTPDLSPRDCRSCLNSLINSDLPRCCAGRQGGRVLYPNCVIRFEIYPFYRSLGSAPTPTPPPPKLGENNSSRSRTIILVVVPIVSLAILSAFCYYFLRRRARKRSKHLLKENFGEESSILEGLQFDLSTVKLATNNFSNESEIGKGGFGEVYKGILPDGRHIAVKRLSIGSKQGSVEFKNEILLIAKLQHRNLVAFMGFCLEEQEKILIYEYVPNHSLDYLLFGTEQEKLNWHHRYKIIKGTAAGILYLHDYSRLKIIHRDLKPSNILLDENMNPKISDFGLARIFDVDQNRAETDRIVGTYGYMSPEYAMLGQFSEKSDVFSFGIIVLEIITGKKNAHSYESHRMEEGLMTEVWREWKNERPMGILDQNMKENYSESEVVRCLQIGLLCVQENPNIRPTMGRVVSYLNNHSLELPSPQEPAFFSHGIDKRAMQQGSSSSFSANSSMPFSVNEMSTSNFYPR* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2346 658 Pfam Protein kinase domain 334 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2346 658 SMART serkin_6 333 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2346 658 ProSiteProfiles Gnk2-homologous domain profile. 20 127 IPR002902 -
Vra8g2346 658 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Vra8g2346 658 CDD STKc_IRAK 339 606 - -
Vra8g2346 658 ProSiteProfiles Gnk2-homologous domain profile. 135 244 IPR002902 -
Vra8g2346 658 Gene3D - 19 127 IPR038408 -
Vra8g2346 658 Gene3D - 138 244 IPR038408 -
Vra8g2346 658 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 250 - -
Vra8g2346 658 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 261 645 - -
Vra8g2346 658 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 261 645 - -
Vra8g2346 658 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 13 250 - -
Vra8g2346 658 ProSiteProfiles Protein kinase domain profile. 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2346 658 Gene3D Phosphorylase Kinase; domain 1 294 408 - -
Vra8g2346 658 SUPERFAMILY Protein kinase-like (PK-like) 317 638 IPR011009 -
Vra8g2346 658 Gene3D Transferase(Phosphotransferase) domain 1 409 613 - -
Vra8g2346 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vra8g2346 658 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Vra8g2346 658 Pfam Salt stress response/antifungal 27 124 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2346 Vra-Chr8 41711472 41720454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2346 22 658 Receptor kinase-like Gene Family AT4G05200 45.537 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2346 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2346 - - vun:114191422 971.459