LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g2345	ATGGCTTCGTATCTCAAATACGTGATACCCTTTATATTTTCTATCATCTTCAACTTCTCTGCCATTAGAGCACAGGGCCTTTCTTATCAGTACCAAGTTTGTTCAACAAACAAATTCACTCCCAATAGCACCTTCCAAAGCCAACTCACAACCCTCTTCTCTTCCTTAACTTCTGAAGCCTCCAAGAATGTCCAATTCTTCAACAACACCATCACTGGGACAAACTCTTCCTACACAGTCTACGGATTATTCATGTGCAGGGGTGACATCCCCTCCGACATGTGCAATCACTGTGTCGGAAACGGAACACAGAGACTATCCACACACGCAGACTGCACCTTGTCCAAAGCAGCAGTGGTGTATTACGATGAGTGCATAGTTAGGTATTCCAACCGTTCTTTCTTCTCCACCCTAACCATGCAAGCTGGTTATGCCCTTTGGAACCCCACCAATATGACCAACCAAGAAAGCTTCAAGACTTTACTGTATGACACCATGAACAAAACTACGGATGAAGCAGCCCATTTTCCTACTGGTTCTAAAAAGTTCGCCACAAGGGAAACAAGCATAGACATATTTCAGAAGCTTTATTGTCTTGCTCAGTGCACACAAGACCTGTCTCCCGGCGATTGCAGAAGCTGTCTCGATAGCTTGATAAACTTTGATCTTCCGGACTGCTGTGCAGGATCCCAGGGAGGAAGAGTTTATTACCCGAACTGCATCATCAGGTTCGAAATTTACCCTTTTTTTCGATCCCTTTCAACGGCACCAACACCATCACCGGCAGGACTAGTTCCTCCGGCCAATTCAGGAGAAAATGAAAGAAGTCGATCTCGAACAATTACCTTAATTGTTGTTCCCATTGTTAGTTTGGCGACTTTCTTGAGTCTAATTTACTATATTCTCAGGAGAAGAGCGAGGAAGCTTCGTAAGATTCTTCTTAGAAAAAATTTTGGGGAAGAAAGTTCCACTCTAGAGGGATTGCAATTTGATTTGGCTACCATTAAAGTAGCAACAAATAATTTTTCCCTTGAGAACAAGATTGGAAAAGGTGGATTTGGAGAGGTTTATAAGGGTATTCTTGTTGATGGGCGACATATAGCTGTTAAAAGACTTTCAACTAATTCTAGACAAGGTTCAGTCGAGTTTAAAAATGAAATTTTATTGATAGCTAAACTCCAACATAAAAATCTTGTGGCGTTGATAGGATTTTGTTTGGAAGAAGAAGAGAAAATCCTTATTTACGAGTATGTATCAAATGGTGGTTTGGACTACTTTTTATTTGGGAATCAAGAGGGGAAGTTAAATTGGTATCAACGTTATAAGATTATTAAAGGAACTGCTCTTGGAATTCTTTATTTACATGACTATTCTCGACTTAAAGTTATTCATCGTGATCTTAAACCAAGTAATATTTTATTGGATGAAAATATGGATTCTAAAATATCAGATTTTGGATTGGCTAGAATTATAGACATAGAGCAAAATCGCGTGGAAACTAAACGCATAGTTGGAACATATGGTTACATGTCACCTGAATATGCAATGTTTGGACAATTCTCAGAAAAATCAGATGTGTTTAGTTTTGGAATTATTATTTTTGAGATTATTACTGGTAAGAAAAATGGAAATTCTTATGGACCAAACCAAGGTGAAGAAGGCTTGATGAGTAATGTTTGGAGAAATTGGACGAATCGAACACCATTGAGTATAGTTGAATCAAATATGAAAGAAATATATTTTGAAAGTGAAGTGATTCGTTGCATTGAAATTGGTTTATTATGTGTCCAAGAAAATCCAGATGATAGACCTACAATTGCAGAAGTTGTTTCTTATCTTAATGATCTCACACTTGAATTGCCATCTCCTCAAGAACCAGCATTTTTCTCTCATGCAATAGATCCAAAAATAGTCATGCAGCAGCAGGGGTCAAGTTCCAACTCATCTGTTGTTGCTTCCATACCATTTTCTATCAATGAAATGTCTATCAGTGACTTTTATCCACGATGA	2010	0.3836	MASYLKYVIPFIFSIIFNFSAIRAQGLSYQYQVCSTNKFTPNSTFQSQLTTLFSSLTSEASKNVQFFNNTITGTNSSYTVYGLFMCRGDIPSDMCNHCVGNGTQRLSTHADCTLSKAAVVYYDECIVRYSNRSFFSTLTMQAGYALWNPTNMTNQESFKTLLYDTMNKTTDEAAHFPTGSKKFATRETSIDIFQKLYCLAQCTQDLSPGDCRSCLDSLINFDLPDCCAGSQGGRVYYPNCIIRFEIYPFFRSLSTAPTPSPAGLVPPANSGENERSRSRTITLIVVPIVSLATFLSLIYYILRRRARKLRKILLRKNFGEESSTLEGLQFDLATIKVATNNFSLENKIGKGGFGEVYKGILVDGRHIAVKRLSTNSRQGSVEFKNEILLIAKLQHKNLVALIGFCLEEEEKILIYEYVSNGGLDYFLFGNQEGKLNWYQRYKIIKGTALGILYLHDYSRLKVIHRDLKPSNILLDENMDSKISDFGLARIIDIEQNRVETKRIVGTYGYMSPEYAMFGQFSEKSDVFSFGIIIFEIITGKKNGNSYGPNQGEEGLMSNVWRNWTNRTPLSIVESNMKEIYFESEVIRCIEIGLLCVQENPDDRPTIAEVVSYLNDLTLELPSPQEPAFFSHAIDPKIVMQQQGSSSNSSVVASIPFSINEMSISDFYPR*	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g2345	669	ProSitePatterns	Protein kinases ATP-binding region signature.	348	370	IPR017441	GO:0005524
	Vra8g2345	669	ProSiteProfiles	Protein kinase domain profile.	342	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2345	669	ProSiteProfiles	Gnk2-homologous domain profile.	27	134	IPR002902	-
	Vra8g2345	669	SMART	serkin_6	342	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2345	669	Gene3D	Transferase(Phosphotransferase) domain 1	418	623	-	-
	Vra8g2345	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	268	655	-	-
	Vra8g2345	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	18	254	-	-
	Vra8g2345	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Vra8g2345	669	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	268	655	-	-
	Vra8g2345	669	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	18	254	-	-
	Vra8g2345	669	ProSiteProfiles	Gnk2-homologous domain profile.	140	249	IPR002902	-
	Vra8g2345	669	Gene3D	-	27	134	IPR038408	-
	Vra8g2345	669	Gene3D	-	140	249	IPR038408	-
	Vra8g2345	669	CDD	STKc_IRAK	348	616	-	-
	Vra8g2345	669	Pfam	Protein tyrosine and serine/threonine kinase	343	613	IPR001245	GO:0004672\|GO:0006468
	Vra8g2345	669	Pfam	Salt stress response/antifungal	151	246	IPR002902	-
	Vra8g2345	669	Pfam	Salt stress response/antifungal	34	131	IPR002902	-
	Vra8g2345	669	Gene3D	Phosphorylase Kinase; domain 1	305	417	-	-
	Vra8g2345	669	SUPERFAMILY	Protein kinase-like (PK-like)	326	648	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g2345	Vra-Chr8	41703272	41706082	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g2345	1	669	Receptor kinase-like Gene Family	AT4G05200	43.251	0.0	542

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra8g2345		PK_Tyr_Ser-Thr	4.2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g2345	-		-	vun:114191422	1176