Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2344 ATGGTAGATTACATGGCTTCCTTTAACCTTGTTCACATCTTTACACTTCTAAGCTTCATCATCAATTTCGTACTCACTCAAGCACAGTGGGACAATCTTTTTTCGGGCCAAAATTGTTCAGAAAGCCTAACCACTCCAAACAGCGCTTTCCAATCGAATGTGAAGATCCTTCTATCATATTTATCTTCCAACGCCACCGCCAACAAGCAATTCTACAACACCACAGTCACGGGTGCAACCCACTCCAACACTGTGTATGGAATGTTCTTCTGCTCGGGTGACGTCCCCCCCGAGCTTTGCAGCCAGTGCGTTGCAAACGCAACCAATGCAATATTTTCAGACCCAGATGCATATCCAAATTGTTCCTTGACCACAGATGCAGTGATTGGGTACCTCAACTGCATGTTTCGCTTTTCCAACCGTTACTTCTTCTCCAAGATTGATCTGTATCCATACTTTGGCTCTGGCAACATTTGCGACCCTAAAAGTGAGCCCACGCAGAAAGAATTGAACGGTTTTTTATTCAAAACATGTAAGGAAGCGGTAGATGAGGCAGCCGAATCTCCTATTGGTGTGAAGAAGTATGCCACAAGGGAAGCAAGGATGTCAGGGTCTCAAACCCTTTACTGTCAAGCTGAATGCACACCTGATCTTTCACCCCATGACTGCAGAAAATGTCTAAATTATCTGATGCCGGCTGCTCAAGACAACAGCTGTCTACCTAGGTTTCGTTTGTCAAGCTGTAGCTTGAGGTGCGAAGTCTACCCTTTCTATCGCCCAAGTACTGCTCTCGCACCTCCTGAACCTGTTCTGGTTCCTGATTCTTCCAACACAGATTCCCAGAATCCTCTTTATCTTTCCCACAACTGTTCCAGTTCCAGCAACAAAGCCATGATCACCGCGGACAGTGCTTTTCTGTCGAATCTCGAGACACTCTTCAGTTACTTGTCTTCCAACTCCACCACCAAAACCCGTTTCTACAACACCACCGTCGAAACGGTGAGTGGCCTCTTCATGTGTCGGGGGGACCTTTCTCCTGATCTATGTCGACTGTGTGTCTTAGATGCAACCAAACTAATAGCCTCCAAGTGCCGCTCTTCGAAAGAGGCAGTTATTTGGTACAATAACTGCTTTCTTCGCTATTCCGATCACCCATTTCCCTCCACACTGGAAATAAGTCCTACCTATCACCGCTTCGATGTAGAAAATACTTCCGCCCCCAATCTGCAGCAAAGATTCTTCACTTGGACTTTGGCCAAGGCTTTATATGAAGCACAGATCGATACTGGGGGACCTTTTAAGAATTATGGAACAAAGGAAGCAAAACTTAATGATCACCAAAGCCTCTATACTCTTGCTCGGTGCACGCCAAATATAGATGGTTTCTCATGCCAAGTCTGTCTTGACCGAATTTTCAAGAACGAAATTCCATGGTGTTGTTTGGCGAGTCCAGTGGGGAAAATATTTTATCCTAGCTGCTATATGATGTTTGGATTGTCCCCTGCTAACACCACTGATCACGAAATTCAAGCCAAAACTCCTGCTACAGGTAGGTCAAGAACAATTATCTTAATTCTTGTCTTTGGGGCTCTCTCGGTGGTACTCCTTTCACTTTGCTGCTATTTAAGACGGAGAAAGGCAAGAAAAAGTACCTATAACACTCTTCTCGGAAAAATTTTTGGTCATGAAAGTGTTACTTTAAAGGGCTTGCAATTTGATTTGAATATAGTCAAAGCAGCAACGAATAATTTTTCCCATGAAAATAAGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTGTCTGATGGACGACAAATAGCTATCAAAAGGCTTTCAAGATGTTCCAAGCAAGGTTCAATAGAGTTCAAAAATGAAGTTTTATTAATAGCCAAGTTACAACACAAAAATCTTGTGACATTTATAGGATTTTGCTTAGAAGAGCAGGAAAAGATTTTGATTTATGAATATATGCCGAAAGGAAGTCTTGATTATCTTTTATTTGATAATGCTCAACCTCAAAAGTTAAGTTGGTCTGAACGTTACAAAATTATAGAAGGAATTTCTTTAGGAATCTTATACTTACATGATTATTCACGACTTAAAATTATACATCGAGATCTTAAACCTAGTAATATTCTATTAGATGAGAACATGAATTCCAAAATATCAGATTTTGGCATGGCTAAAATTGTGGATTTGGATCAAGATCGGGAAAATACTAATAGAATTGTTGGAACATATGGTTACATGTCACCAGAATATGCTATGCTTGGACAATTTTCTGAAAAGTCAGATATTTTTAGTTTCGGTGTCATGGTTCTTGAGATTGTTACCGGAAAAAGGAACGCTAATGCTTATGAATCACAAGATGAATCTGGTACTATTGTGGAAGGCCTCATGGGTTATGTTTGGAGACAATGGAAGGACGAAAGATTATTAAGTATTTTGGACTCAAACATAAAGGAAAGTTTTTCACAAGAAGAAGTTCTTAAATGTATTCATATTGGTTTATTATGTATTCAAGAAAATCCAAATATTAGACCCACAATGGCAACTGTGGTTGCATACCTTAGTGGTCAATCACCTGAATTGTCATCTCCACAAGATCCAACACTTTTCATGCGAAACACAGATCATCCGATAATTCCTCAACAAAGATCAAGTTCTAGTCAAAATAAAACTAGTTATAACCAGTTCTCTATTAATGAAGTATCTATAAGTAATTTGTATCCAAGATAA 2748 0.4014 MVDYMASFNLVHIFTLLSFIINFVLTQAQWDNLFSGQNCSESLTTPNSAFQSNVKILLSYLSSNATANKQFYNTTVTGATHSNTVYGMFFCSGDVPPELCSQCVANATNAIFSDPDAYPNCSLTTDAVIGYLNCMFRFSNRYFFSKIDLYPYFGSGNICDPKSEPTQKELNGFLFKTCKEAVDEAAESPIGVKKYATREARMSGSQTLYCQAECTPDLSPHDCRKCLNYLMPAAQDNSCLPRFRLSSCSLRCEVYPFYRPSTALAPPEPVLVPDSSNTDSQNPLYLSHNCSSSSNKAMITADSAFLSNLETLFSYLSSNSTTKTRFYNTTVETVSGLFMCRGDLSPDLCRLCVLDATKLIASKCRSSKEAVIWYNNCFLRYSDHPFPSTLEISPTYHRFDVENTSAPNLQQRFFTWTLAKALYEAQIDTGGPFKNYGTKEAKLNDHQSLYTLARCTPNIDGFSCQVCLDRIFKNEIPWCCLASPVGKIFYPSCYMMFGLSPANTTDHEIQAKTPATGRSRTIILILVFGALSVVLLSLCCYLRRRKARKSTYNTLLGKIFGHESVTLKGLQFDLNIVKAATNNFSHENKIGKGGFGEVYKGILSDGRQIAIKRLSRCSKQGSIEFKNEVLLIAKLQHKNLVTFIGFCLEEQEKILIYEYMPKGSLDYLLFDNAQPQKLSWSERYKIIEGISLGILYLHDYSRLKIIHRDLKPSNILLDENMNSKISDFGMAKIVDLDQDRENTNRIVGTYGYMSPEYAMLGQFSEKSDIFSFGVMVLEIVTGKRNANAYESQDESGTIVEGLMGYVWRQWKDERLLSILDSNIKESFSQEEVLKCIHIGLLCIQENPNIRPTMATVVAYLSGQSPELSSPQDPTLFMRNTDHPIIPQQRSSSSQNKTSYNQFSINEVSISNLYPR* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2344 915 Pfam Salt stress response/antifungal 290 383 IPR002902 -
Vra8g2344 915 Pfam Salt stress response/antifungal 39 140 IPR002902 -
Vra8g2344 915 ProSiteProfiles Protein kinase domain profile. 584 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2344 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Vra8g2344 915 ProSiteProfiles Gnk2-homologous domain profile. 392 502 IPR002902 -
Vra8g2344 915 ProSiteProfiles Gnk2-homologous domain profile. 32 143 IPR002902 -
Vra8g2344 915 ProSitePatterns Protein kinases ATP-binding region signature. 590 612 IPR017441 GO:0005524
Vra8g2344 915 CDD STKc_IRAK 590 860 - -
Vra8g2344 915 Gene3D Transferase(Phosphotransferase) domain 1 660 872 - -
Vra8g2344 915 SUPERFAMILY Protein kinase-like (PK-like) 569 893 IPR011009 -
Vra8g2344 915 Gene3D Phosphorylase Kinase; domain 1 547 659 - -
Vra8g2344 915 Pfam Protein kinase domain 585 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2344 915 ProSiteProfiles Gnk2-homologous domain profile. 152 257 IPR002902 -
Vra8g2344 915 Gene3D - 155 257 IPR038408 -
Vra8g2344 915 Gene3D - 32 143 IPR038408 -
Vra8g2344 915 Gene3D - 285 386 IPR038408 -
Vra8g2344 915 Gene3D - 395 501 IPR038408 -
Vra8g2344 915 ProSiteProfiles Gnk2-homologous domain profile. 287 386 IPR002902 -
Vra8g2344 915 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 22 270 - -
Vra8g2344 915 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 510 894 - -
Vra8g2344 915 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 279 497 - -
Vra8g2344 915 SMART serkin_6 584 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2344 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 510 894 - -
Vra8g2344 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 279 497 - -
Vra8g2344 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2344 Vra-Chr8 41696627 41700637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2344 278 915 Receptor kinase-like Gene Family AT4G05200 39.371 1.42e-157 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2344 Pkinase 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2344 - - vun:114191422 1613.97