Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2343 ATGGCTTCCTTCAACCTTCTCCACATCTTTACCTTTCTCAGCTTCATCACCAATTTCGTACCCACTGAAGCACAGTTCGACCGTAGTTCCTTGGGCCCCCGTTGCGCATATTTCAACAGCACCACTGAAAACAGCACCTTCGCATTTAACCTTAGGGCCATTCTTTCTGATTTGTCTTCCAATGCTACCGCTAATAACAACACATTCTACAACACAACAGTGGCCACCAGAAACCACCCCGAAAGTACTGTCTACGGAATGTTCTTCTGCTGGGGTGATGTCCCACCTCAGCTTTGTAGCCAGTGTGTGGCAAGCGCAACCAAAGCAGTGTTCTCAGATCCAGATCAAGAACTCATGTGTTCCTTAGCCCCAGATGCATATATTACCTACAGAGACTGTATGATTCGGTATTCCAACATTTCTTTTTTTTCCACCCCTGACTTAGCTTCGGGTTCCCTTTCATGCTTCTCTATCAATGTGTCCAACAAGACAAACTTGATGAGTTTGTATTCGAAAACCATTAACCAAGTGGTGGAAAAGGCAGCAAATTCTCCTGTCGGTGAGAAGAAGTATGCCACAAAGGAAGCAAGGGTATCTGGATTTCAGACCCTTTATTGTGAAGCTCAGTGCACACCTGACCTGTCACCCCAAGATTGCAGAAAATGTCTAAATTATAGCCTAGCGGAAGCTCAACGGATGTGTCCATCAGATTTACCCATGTGGGATGATAATCCCAGCTGTAACATGAGGTGCGATGTGTATCCTTTCTATCGCCCCAGTACCTCTCCCCCACCTTCGGCACTCGTTGAGGTCACACATTCTTCCAACACAGATTCACAACGTCCTGCTTACCTTTCCCACAAGTGTTCCAGGAACGAAACCAATATCACTACCGACAGAACTTTCCGGTCAAATCTCAAGACCCTCTTCACTTCTTTGTCTTCCAAGTCCACCTCCAACTCCGGTTTCTTCAATGACACTGTGGACACGGTCAGTGGCTTCTTCATCTGCTTCGGTGACCTTTCCCCTACCCTCTGTGAGTTATGTATCAAAAATGCAACCCAAAGAATATCCTCAGAATGCCCCTCCTCCAAAGAAGCTGCCATTTGGTACAATCACTGTCTGCTTCAATATTCCGATCACCCCTTTCTCCCCACACTGGACACAACCCCTACTTATCGCCACTTCAATACCGTCAATACTTTCAAACCCAACCCGCAGCAAAGCTTCTTCGCATGGACTTTGGCCAATTCTTTATCTCAACTGCAATCGGATATTGCGGCGGAGCACACTAACACTAAAAATTGTGGAATTAAATCAGGAAAACTGAATGATAAACAAACCCTCTATACTCTTGCTCAATGTAGGCCAGATCTATCTTCTTCAGATTGCAACACCTGCCTAGATAGCATTATCAGAAACGAAATGCCATGGTGTTGTTTAGCAAGTCCAGAGGGAAAAGTAGTGTATCCAAGCTGCTATATTATGTTTGGCTTGTCCCCATTTAACAGTGAAACTTCTCAAGTTGAGCCGCGCAAGCCAGATAGTTCTTCTCCTGCCAAAGAAAATGATAATGGGTCGAAAACCTTTATCTTAATTGTTGTCCCCATAGGCGTCTCTGTCATACTCCTTTCCTTCTGCTACTATTTGCTAAGGAGAAATACAAGGAAAATTAATTACAACACTCTTCTCAGAGAAAATTTTGGGCAGGAAAGTATCACTTTAGAGGGATTGCAATTCGATTTAACTACAATTAAAGCAGCAACAAATAATTTTTCGCTCGCGCAGAAGATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTGCTGATGGACGTCATATAGCTGTAAAAAGACTCTCAACAAGATCTAAACAAGGTTCAGTCGAGTTTAAGAATGAAGTTCTACTAATAGCCAACCTTCAACACAGAAATCTTGTGTCACTTATTGGATTTTGCTTAGAAGGAGAAGAAAAAATTCTTATATATGAATACTTGTCAAATGGAAGTCTTGATTACCTTTTATTTGGTACTCAAGAGACAAAATTAGATTGGCCTACACGTTACAGTATTATAAAAGGGACTGCTTCAGGAATTCTTTATTTACATGAATATTCTCGACGTAAAGTTATACATCGTGATCTTAAACCTAGTAATATTCTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTTGGCATGGCGAGAATCGTTGAAATGGATCAAGATGGTGGGAATACACGTAAAATAGCTGGAACATACGGATATATTTCACCAGAATATGCTATGTTTGGACAATTTTCTGAAAAGTCAGATATTTTTAGTTTTGGTATTATGATTCTTGAGATTATCACCGGAAAAAAGAATATAAAGTTTTATGAATCTTTGGATGTTGGAGAAGGGATAATTGGTTATGTTTGGAAACATTGGAATGATCATGAACCATTAAGCATCTTGGACTCATACATTAAAGAAAGTTATTCAGCAATGGAAGTTCTTAAATGCATTCACATCAGTCTATTATGTGTTCAAGAAAATCCAAACGAGAGACCTACAATGCCAACAATTATTTCATATCTTAACAATCACTCACTTGAATTGCCATCTCCACTGGAACCCACATTTTCCTTCCACAGATGCAGAATCGACTCAGAGATACAAAGACAATCCAAACCCAATGAAACTTCTGGCAGCTCGGAATCTATTAATGGCATGTCTACGAGTATTTTTCATCCACGTTAG 2751 0.4075 MASFNLLHIFTFLSFITNFVPTEAQFDRSSLGPRCAYFNSTTENSTFAFNLRAILSDLSSNATANNNTFYNTTVATRNHPESTVYGMFFCWGDVPPQLCSQCVASATKAVFSDPDQELMCSLAPDAYITYRDCMIRYSNISFFSTPDLASGSLSCFSINVSNKTNLMSLYSKTINQVVEKAANSPVGEKKYATKEARVSGFQTLYCEAQCTPDLSPQDCRKCLNYSLAEAQRMCPSDLPMWDDNPSCNMRCDVYPFYRPSTSPPPSALVEVTHSSNTDSQRPAYLSHKCSRNETNITTDRTFRSNLKTLFTSLSSKSTSNSGFFNDTVDTVSGFFICFGDLSPTLCELCIKNATQRISSECPSSKEAAIWYNHCLLQYSDHPFLPTLDTTPTYRHFNTVNTFKPNPQQSFFAWTLANSLSQLQSDIAAEHTNTKNCGIKSGKLNDKQTLYTLAQCRPDLSSSDCNTCLDSIIRNEMPWCCLASPEGKVVYPSCYIMFGLSPFNSETSQVEPRKPDSSSPAKENDNGSKTFILIVVPIGVSVILLSFCYYLLRRNTRKINYNTLLRENFGQESITLEGLQFDLTTIKAATNNFSLAQKIGKGGFGEVYKGILADGRHIAVKRLSTRSKQGSVEFKNEVLLIANLQHRNLVSLIGFCLEGEEKILIYEYLSNGSLDYLLFGTQETKLDWPTRYSIIKGTASGILYLHEYSRRKVIHRDLKPSNILLDENMNPKISDFGMARIVEMDQDGGNTRKIAGTYGYISPEYAMFGQFSEKSDIFSFGIMILEIITGKKNIKFYESLDVGEGIIGYVWKHWNDHEPLSILDSYIKESYSAMEVLKCIHISLLCVQENPNERPTMPTIISYLNNHSLELPSPLEPTFSFHRCRIDSEIQRQSKPNETSGSSESINGMSTSIFHPR* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2343 916 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 267 - -
Vra8g2343 916 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 275 503 - -
Vra8g2343 916 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 521 890 - -
Vra8g2343 916 ProSiteProfiles Gnk2-homologous domain profile. 392 502 IPR002902 -
Vra8g2343 916 SUPERFAMILY Protein kinase-like (PK-like) 576 889 IPR011009 -
Vra8g2343 916 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
Vra8g2343 916 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 275 503 - -
Vra8g2343 916 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 267 - -
Vra8g2343 916 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 521 890 - -
Vra8g2343 916 CDD STKc_IRAK 598 865 - -
Vra8g2343 916 ProSiteProfiles Gnk2-homologous domain profile. 29 142 IPR002902 -
Vra8g2343 916 MobiDBLite consensus disorder prediction 889 916 - -
Vra8g2343 916 ProSiteProfiles Gnk2-homologous domain profile. 148 256 IPR002902 -
Vra8g2343 916 Pfam Salt stress response/antifungal 163 252 IPR002902 -
Vra8g2343 916 Pfam Salt stress response/antifungal 289 380 IPR002902 -
Vra8g2343 916 Pfam Salt stress response/antifungal 407 497 IPR002902 -
Vra8g2343 916 Pfam Salt stress response/antifungal 39 139 IPR002902 -
Vra8g2343 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Vra8g2343 916 SMART serkin_6 592 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2343 916 Gene3D Phosphorylase Kinase; domain 1 554 667 - -
Vra8g2343 916 ProSiteProfiles Protein kinase domain profile. 592 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2343 916 MobiDBLite consensus disorder prediction 892 916 - -
Vra8g2343 916 Gene3D Transferase(Phosphotransferase) domain 1 668 870 - -
Vra8g2343 916 Gene3D - 282 383 IPR038408 -
Vra8g2343 916 Gene3D - 33 142 IPR038408 -
Vra8g2343 916 Gene3D - 391 502 IPR038408 -
Vra8g2343 916 Gene3D - 151 256 IPR038408 -
Vra8g2343 916 MobiDBLite consensus disorder prediction 504 523 - -
Vra8g2343 916 ProSiteProfiles Gnk2-homologous domain profile. 284 383 IPR002902 -
Vra8g2343 916 Pfam Protein tyrosine and serine/threonine kinase 593 862 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2343 Vra-Chr8 41690739 41695769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2343 277 916 Receptor kinase-like Gene Family AT4G05200 41.441 3.97e-168 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2343 PK_Tyr_Ser-Thr 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2343 - - gmx:100785282 1125.54