Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2342 ATGGCTTCATTTTACTTGTTCATTTTGCACCTATCTTTCTTTTCCCTCTTTATTCATTGCTCTCCTTATAATATCATCCAAGGTGCTACCCATGAAAATCCCAAAGCTTTTTATAACTGCACAAGGAACACCACTTCTGCTTCCTATAGCGTGGCTTACCGTTCTAACGTCAAAACACTCCTAGATTGGCTCTCCTCCAATGCCACCAACCACGACAGATTCTACAACACCACAGTTGCTAGTGGACACACAGAAAACACTGCCTATGGTAGCTTCCTTTGTACTAGAGGCTTCCCTAAACTCTGCCAACAATGCGTCACAGAAGCTGCCAAACTTCTATCATCACTTTGCACCATTGCAAAAGAGGCTATTATATGGTACGAAGCGTGCTATGTGCGCTACTCTGATCATTATTTCTTCTCCACTGTGGAGGAAAGTCCTAAACTCTCCTTTATGAATGATCAGGACTATGAGGGTCCGGTTGAGCACTTCAACACTGCTGTGTGGGATATGCTGATCGATTTGAGAAGTGAGGCAGCAAGTGCTTCAGATAAATGCGCTGATAAGTCTGTGAATATCACAGATAACCAAAAGTCTTATGGCTTTGCTTGGTGCCTACCATACCTGTCCAAAGACAAGTGCAGATGGTGTCTTAGCGAGGCCATAGCAAACAATCCAAACGGTTGCTGCACAGGAAAATCTGGTGCAACAGTAATATTTCCTTCTTGTGGTATTAGATACGAATTATATCCATTCCTTTTGGTACATAGTAGCTGGGTGTCTCCTCCACCACTTCTCAACAGTCCTCCTCCTTTTGCTTCACCAGGGAAAAGAAAACAGAAGACACTAACAATAATTGTGACGGTTGTTCCAATTGTTGTTTCATTGGTGCTTTTATCCTTGGGTTGTGGCTGTGTTCTACGAAGGAAAGAATCAAAGAATCAACACGATATTCTCAAAGAAAGCTTTGGAAATGACAGTACCACTTTGGAGTCCTTGCGATTTGAATTAGTCAAAATTGAAGCTGCAACAAATAGATTCGCTAAAGAAAACATGATAGGCAAAGGCGGATTCGGAGAGGTTTACAGGGGTATTCTTTCAGATGGACAAGAGATAGCTGTGAAGAGACTTACGGGAAGCTCTCGGCAGGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCTAAGCTTCAACATAGAAATTTAGTAAGATTACTCGGATTTTGCTTGGAAGACGACGAAAAGATACTCATTTATGAGTATGTACCAAACAAGAGTCTTGATTATTTTTTATTAGATATCAAGAAGCGAAGATTGCTATCGTGGTCTGAACGACTGAATATTATAAAAGGAATCGCACGAGGAATTTTATATCTACATGAAGATTCTTGTTTAAAAATAATACACCGTGATCTAAAACCCAGTAATGTCTTATTAGATAGTAATATGAATCCAAAAATTTCAGACTTTGGAATGGCTAGAATTGTTGCCGGAGATGAGATCGAAGCAAGTACGGGCAGAATTGTAGGGACATATGGTTACATGTCCCCGGAATACGCTATGCATGGACAATTTTCTGTGAAATCTGATGTATTTAGTTTTGGTGTTATGGTTCTGGAAATTATTAATGGAAAGAGGAAAGGTTGCTCGTCTGAACCAGAGGTTATTGATGACATCCGCAGACATGCTTGGACAAAATGGAGAACGGAAACAGCACTAGAACTGTTGGATCCTGAGATAGAAGGAGCTTATTCTGGTGAAGAAGTGATGAAATGTATCCACATTGGTTTGTTATGTGTTCAAGAAGATCCAAACGATAGGCCTACAATGGCAACAGTTGTGCTTTATCTCAACAACCCTTCAATTAACTTGCCTTCCCCTCATGAACCAGGATATTTTAAGCATAACAGAGAACAAGTCAACATCACCACCGATAAAGAATTCGATAATGTCAGTGATTCTGTCAACGAAATTTCTCTAACTAAATTCTTTCCTCGATAA 2004 0.4012 MASFYLFILHLSFFSLFIHCSPYNIIQGATHENPKAFYNCTRNTTSASYSVAYRSNVKTLLDWLSSNATNHDRFYNTTVASGHTENTAYGSFLCTRGFPKLCQQCVTEAAKLLSSLCTIAKEAIIWYEACYVRYSDHYFFSTVEESPKLSFMNDQDYEGPVEHFNTAVWDMLIDLRSEAASASDKCADKSVNITDNQKSYGFAWCLPYLSKDKCRWCLSEAIANNPNGCCTGKSGATVIFPSCGIRYELYPFLLVHSSWVSPPPLLNSPPPFASPGKRKQKTLTIIVTVVPIVVSLVLLSLGCGCVLRRKESKNQHDILKESFGNDSTTLESLRFELVKIEAATNRFAKENMIGKGGFGEVYRGILSDGQEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLDYFLLDIKKRRLLSWSERLNIIKGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAGDEIEASTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGCSSEPEVIDDIRRHAWTKWRTETALELLDPEIEGAYSGEEVMKCIHIGLLCVQEDPNDRPTMATVVLYLNNPSINLPSPHEPGYFKHNREQVNITTDKEFDNVSDSVNEISLTKFFPR* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2342 667 Pfam Protein tyrosine and serine/threonine kinase 350 616 IPR001245 GO:0004672|GO:0006468
Vra8g2342 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 667 - -
Vra8g2342 667 Gene3D Transferase(Phosphotransferase) domain 1 423 625 - -
Vra8g2342 667 Gene3D Phosphorylase Kinase; domain 1 307 422 - -
Vra8g2342 667 Gene3D - 34 139 IPR038408 -
Vra8g2342 667 Gene3D - 148 252 IPR038408 -
Vra8g2342 667 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Vra8g2342 667 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
Vra8g2342 667 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Vra8g2342 667 Pfam Salt stress response/antifungal 159 250 IPR002902 -
Vra8g2342 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vra8g2342 667 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Vra8g2342 667 SMART serkin_6 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2342 667 SUPERFAMILY Protein kinase-like (PK-like) 330 638 IPR011009 -
Vra8g2342 667 CDD STKc_IRAK 353 620 - -
Vra8g2342 667 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2342 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2342 Vra-Chr8 41687401 41690473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2342 7 667 Receptor kinase-like Gene Family AT4G05200 44.298 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra8g2342 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2342 - - gmx:100793219 1003.43