Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2336 ATGAATTCAGAAAGCGGGGTTTCGCCTAAGATGGAATTGGAATCTGGAGTTTTGAATTCAAATATCAGTAGTGAAAATCTTAGAGCTGATAAAATTAATAAAATTGATTTGAAGAAGATGGATGCCATGCTAGAAAAACACTTGAACAGGCTTTTTTCCAAAAGCGTTGCAGCAAAAAGGCCAAAAGAAGCATGGGATGTTGATACAGCCAAATTGGATATACTTTATTCTGTAGCTAAAGAGACTTATGGTACTGTCTACAGGGGTACTTATGATGGCCAAGATGTTGCAGTGAAAGTCTTGGACTGGGGTGAAGATGGTGTTACCCCTGCGGTTAAAATTGCCTCTTTAAGGTCATCATTTTGGCAGGAAGTCACCGTATGGCAAAAGCTTGATCATCCAAATGTCACAAAATTTATTGGAGCTTCATTGGACACTTCAAATATTCCTTTACCAACCAGTTATCCAAATTCTATTCCTTCCAAGACGTGTTGTATAGTTGCCGAGTTTCTTCCTGGCGGAACATTGAAACAGTACTTGTCCAGAAATAGGCAGAACAAACTTCCATACGAGGTTGTGATTAAGCTGGCTTTGGACCTTTCTAGAGGTCTTTCTTATCTACATTCAAAGAAAATTGTTCACCGGGACATAAAACCAGATAATATTTTATTGGATGCTAATAAAAATTTAAAAATAGCTGATTTTGGAGTTGCTCGTATTGAAGCTATCGACCAAAGTGAGATGACAGGTGAAACCGGAACCTATGGATATATGGCACCAGAGGTTGTAAATGGCAAGCCTTATAACAGGAAATGTGATGTCTACAGTTTTGGTATTTGCCTATCCGAAATCTATAGCTGTAATATGCCGTTTTCTAAGCTCAGCCTTGCTACTGTGTCATGTGCCCTTATTAATAAGCATTTACGACCTAATATTCCAAGAAATTGTCCAAGTGCCTTAGCAAACATCATACGGAAATGCTGGGATCCAAAACCAGAGAGGCGACCAGAAATGCATGAGGTGGTGACAATGTTGGAAGCAATTGACACAAGCAAAGGAAGTAGAATGATAAGAAAAGATAAAAATCCACTTTCTTTGTGTTTTTTACCTTCTGGTCGTTCTTAG 1125 0.3858 MNSESGVSPKMELESGVLNSNISSENLRADKINKIDLKKMDAMLEKHLNRLFSKSVAAKRPKEAWDVDTAKLDILYSVAKETYGTVYRGTYDGQDVAVKVLDWGEDGVTPAVKIASLRSSFWQEVTVWQKLDHPNVTKFIGASLDTSNIPLPTSYPNSIPSKTCCIVAEFLPGGTLKQYLSRNRQNKLPYEVVIKLALDLSRGLSYLHSKKIVHRDIKPDNILLDANKNLKIADFGVARIEAIDQSEMTGETGTYGYMAPEVVNGKPYNRKCDVYSFGICLSEIYSCNMPFSKLSLATVSCALINKHLRPNIPRNCPSALANIIRKCWDPKPERRPEMHEVVTMLEAIDTSKGSRMIRKDKNPLSLCFLPSGRS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2336 374 CDD STKc_MAP3K-like 83 345 - -
Vra8g2336 374 ProSiteProfiles Protein kinase domain profile. 72 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2336 374 Gene3D Transferase(Phosphotransferase) domain 1 173 364 - -
Vra8g2336 374 SUPERFAMILY Protein kinase-like (PK-like) 60 345 IPR011009 -
Vra8g2336 374 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 21 366 - -
Vra8g2336 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vra8g2336 374 PRINTS Tyrosine kinase catalytic domain signature 168 181 IPR001245 GO:0004672|GO:0006468
Vra8g2336 374 PRINTS Tyrosine kinase catalytic domain signature 206 224 IPR001245 GO:0004672|GO:0006468
Vra8g2336 374 PRINTS Tyrosine kinase catalytic domain signature 272 294 IPR001245 GO:0004672|GO:0006468
Vra8g2336 374 PRINTS Tyrosine kinase catalytic domain signature 316 338 IPR001245 GO:0004672|GO:0006468
Vra8g2336 374 Gene3D Phosphorylase Kinase; domain 1 63 155 - -
Vra8g2336 374 Pfam Protein tyrosine and serine/threonine kinase 78 345 IPR001245 GO:0004672|GO:0006468
Vra8g2336 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 366 - -
Vra8g2336 374 SMART serkin_6 72 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2336 Vra-Chr8 41647249 41649938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2336 3 374 MAP Kinase Kinase Kinase AT3G22750 58.090 4.79e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra8g2336 PK_Tyr_Ser-Thr 2.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2336 - - gmx:100807899 580.482