Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2335 ATGGACACTCCAGATAGGAGCAAGATCAACAACCCTCTTTCTCAGTTTGAGGATTCACCAGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCTGTTAAGTCTGTTCACATTACCCAGACCTTCAATTCGCTTAGCTTCTCATCCCCTCCATCTGTTTTCACATCACCCCATGTCAATTGCCACAGAGAATCCAGATTCCTCAGGAGGCATAACCTTTTAGATGCATCCAAAGCTAAGGCTTCATCTGAAGATATAAACAATGTTTATTCATGTGAAAAGACTCCCGCAGATTCAACTCAACCATGTCATGAATCAAGTGAGCCACAGGAAAATACCAATCCAAATATTTCCATAAGAGATGCCTCAATCGAGCCACATGATGAAAACCCAAATATCTCAATCGAGGTCCCACAAGGCTTGAAATATAATTTGGCTAGCCCAGGATTTGAACCTGTGATCTGTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCGGGCAAACCAGGATCAGATGTTGCTTATGTTCCAGATGACTCTGAAAAGGATTCAATTGAGGGTGAAATGCATCCTCCAGCTTTATGTCAAACTGAAGAAAAAATTGAAGGATCAAATTGTGGTGTGGATGATTTAATTAATGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATATGACAGAGGCTTTTAAGGATATAAATAAACAATTAAATCCTTCAACAAAGCTTACTAATTTGAGGACTTTATTACGACAATCTGCTACCAATGATGGTCAACAAATGCACATTGTTGATACAGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATCCTTGTGAATCAGGAGCAGCCACAGACACAGTTCAGAGACAAGACAAACATAACAATGTTGCTTTGGTGGCTAACAATCCCATTGAGAAAGTGGATGATAAGCTTGTTTATGTGACACACCGTGGTATACGGAGACGCTGTTTAGATTTTGAGATGGCCAGTGTCCAAAGGAAGAACCTAGATGGTAAATCAAACACCAATTCCAGTAAAGAAAAGTCTGAGGAGATGGATGTTAGTAAAGGAAAACAACTGCTTCCCATTAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCCCTTGCTAGCTTAAATGATTGCAAAAACATAAAAATTGAGACACTGCTATCTGGAAGGCAACCTAACCTTCCCAGCTCCTCCTCATCCTTGCAACTTTCTGCAAGCCAAGATCATCAACTATCATTGGTACCTACATCAGTGGAAAAAGATTTGGAGCAATCAGAGAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGGTTCACATGTCTGGTGAAGATTGTACCCAGGCTTTGGTTCACATGCCTGGTGAAGATTTCCAGCAGAATAGTCCAAAAAAGAAAAGGCGCAGGTTAGAACCAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAGCCCTGTTCATGTCGTGATTGCTTTAACAAACCTATTCATGTTGATACCGTCCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGGGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACGTATGGTAGAAAGGATGGTTCTGTTCATTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGATGGAAAAGGCTTCACATAAAACTGAAACACAAAATACTGAAGACCATCCTGATCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGATCCCATTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACCACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAACTCGGAAAATCAAGTGCTCCGCGGTCTCAACCTAAATTTGAAATGCCTTTGCAAACTGTTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCACCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATCTTACAATCTATCCCTTCATTTCCTTCACTCACCCCTCACAATCTTCGGAGTGACTGA 2352 0.4184 MDTPDRSKINNPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKAKASSEDINNVYSCEKTPADSTQPCHESSEPQENTNPNISIRDASIEPHDENPNISIEVPQGLKYNLASPGFEPVICADEADSLLELPGKPGSDVAYVPDDSEKDSIEGEMHPPALCQTEEKIEGSNCGVDDLINEASDLLMFSPPNMTEAFKDINKQLNPSTKLTNLRTLLRQSATNDGQQMHIVDTVASGSEHEIENHPCESGAATDTVQRQDKHNNVALVANNPIEKVDDKLVYVTHRGIRRRCLDFEMASVQRKNLDGKSNTNSSKEKSEEMDVSKGKQLLPIKHSGDSRKCVLPGIGLHLNALASLNDCKNIKIETLLSGRQPNLPSSSSSLQLSASQDHQLSLVPTSVEKDLEQSENEVQPGEDCTQPLVHMSGEDCTQALVHMPGEDFQQNSPKKKRRRLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRGSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVHSGIEAKPEEETEACEKGVMEKASHKTETQNTEDHPDHALPTTPLRLSRSLIPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFEMPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2335 783 MobiDBLite consensus disorder prediction 475 494 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 469 494 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 769 783 - -
Vra8g2335 783 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 778 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 703 783 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 405 425 - -
Vra8g2335 783 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 778 IPR044522 GO:0003700
Vra8g2335 783 ProSiteProfiles CRC domain profile. 494 619 IPR005172 -
Vra8g2335 783 SMART CXC_2 579 620 IPR033467 -
Vra8g2335 783 SMART CXC_2 493 534 IPR033467 -
Vra8g2335 783 MobiDBLite consensus disorder prediction 93 135 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 338 364 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 648 668 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 730 754 - -
Vra8g2335 783 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 496 531 IPR005172 -
Vra8g2335 783 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 582 617 IPR005172 -
Vra8g2335 783 MobiDBLite consensus disorder prediction 93 121 - -
Vra8g2335 783 MobiDBLite consensus disorder prediction 343 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2335 Vra-Chr8 41626021 41631714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2335 12 778 CPP Transcription Factor Family AT3G22780 41.814 1.21e-152 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vra8g2335 TCR 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2335 - - var:108326442 1478.38