Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2332 ATGACAGAAAATCACTGGGCATCATTAATGGCTTATAATTCTCCCAAGAGAAAAGGTCCTTATCTTAATGCAGTATTCCAGGTCTCCCTCCTCCTAATTCTCATCTCCTTCATCAACCCTTCACACCCTTTTTCACCTCTTCCCCCTCTAAACCCAAGGCTCTCCAAAGCCTACACAGCACTCCAAGCATGGAAACACAAAATCACATCAGACCCCAAAAACTTTACCTTAAACTGGTGTGGCCCCAATGTTTGCAACTACACTGGCATATACTGTGCACATGCCCCAGATGATCCTCACATCTACACTGTTGCTGGAGTTGACCTAAACCATGCCTCCATATCTGGTTCATTGCCAGAAGAACTTGGCCTTTTAACTGACCTAGCGCTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCCCTCCCCAACAGCTTCGACCAGCTAAATCTCCTCCATGAACTAGACATAAGCAACAACCAATTCTCAGGACCCTTCCCCGATGTTCTTCTCTGCATCTCCTCGTTAAAATACTTAGACATCAGATTCAATAACTTCTACGGCAACATTCCCTCCCGCCTCTTCGATCTCAAACTCGATGCCCTTTTCATCAACAACAACAACTTCAAATTCTCCCTGCCTGAGACCTTCGGCAATAGTCCTGCTTCTGTTGTTGTGTTTGCAAACAATGACCTCAAGGGTTGTCTCCCTTCGAGTTTGGCCAAAATGAACGGTACCCTTAACGAGATTATCATCACCAACAGTGGTTTAACTGGCTGTTTGCCTAGTGAGATAGGGAATTTGAACAAAGTAACAGTGTTTGATGTGAGCTTCAACAAGCTTGTTGGAGATTTGCCCCAGTCCCTGGGGAAAATGAAGAGGTTGGAGCAGTTGAATGTGGCGCATAACATGCTTTCTGGCACCATTCCTGAGAGTGTGTGCATGTTGCCCAAGTTGGAGAATTTCACGTACTCGTACAACTACTTCTGCAGTGAGTCACCGGTGTGTCTCAAGTTGAAGGATAAGGATGATACCAAGAACTGCATTCCTTATAGGCCATTGCAAAGGTCACCTGATCAGTGTGCAGCTTTCTACAAATATCCTGTTCATTGTAGTGCCTTTGGTTGTGTATCTCCGCCGCCGCCGCCGCCACCACCTCCTCCTCCTTCACCACCACCTCCTCCGCCGCCTCCACCAGCGGAAAAATACCACCACTATCCCTGA 1224 0.4681 MTENHWASLMAYNSPKRKGPYLNAVFQVSLLLILISFINPSHPFSPLPPLNPRLSKAYTALQAWKHKITSDPKNFTLNWCGPNVCNYTGIYCAHAPDDPHIYTVAGVDLNHASISGSLPEELGLLTDLALFHINSNRFCGSLPNSFDQLNLLHELDISNNQFSGPFPDVLLCISSLKYLDIRFNNFYGNIPSRLFDLKLDALFINNNNFKFSLPETFGNSPASVVVFANNDLKGCLPSSLAKMNGTLNEIIITNSGLTGCLPSEIGNLNKVTVFDVSFNKLVGDLPQSLGKMKRLEQLNVAHNMLSGTIPESVCMLPKLENFTYSYNYFCSESPVCLKLKDKDDTKNCIPYRPLQRSPDQCAAFYKYPVHCSAFGCVSPPPPPPPPPPPSPPPPPPPPPAEKYHHYP* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2332 407 MobiDBLite consensus disorder prediction 380 407 - -
Vra8g2332 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 41 383 - -
Vra8g2332 407 Pfam Leucine rich repeat N-terminal domain 58 92 IPR013210 -
Vra8g2332 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 383 - -
Vra8g2332 407 SUPERFAMILY L domain-like 58 336 - -
Vra8g2332 407 Gene3D Ribonuclease Inhibitor 223 346 IPR032675 -
Vra8g2332 407 Gene3D Ribonuclease Inhibitor 55 222 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2332 Vra-Chr8 41592373 41593870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2332 38 384 Leucine-rich Repeat extension Gene Families AT3G22800 65.714 2.68e-159 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2332 - - gmx:100813811 659.062