Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2323 ATGAATCCTCAAGGTCCAGTGAAGGAAGAGTTTCTCGGAGAAAGTTCTTCCTTTTATGCTGGCTATGATCCGCCCCCAATAATGATTGTTCCTCAACCGGTTCAGGGGCTTCATCAAACTGCTCCTCCGCCATTCCTAACAAAAACATACGACATTGTTGATGACCCTTCCACTAACCATATAATTTCCTGGAGCAAGGGGAACAATAGCTTCATTGTGTGGGATCCACAGGCCTTTTCCGTCACCCTTCTGCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAACGAGATGTTTCTCAGAGGGCAAAGGATTCTTCTGAAGAGCATTAGAAGGCGGAAAACAAATCACCAATCTCATGCGATGCAGCAAGGGGTGGATCCTTGTGTTGAGGTGGGGCTGTTTGGATTAGATGGAGAAGTTGACAGGTTGAAGCGTGACAGGCAAGTTCTTATGGCGGAGTTGGTGAAACTCAGACAACAGCAACAGAATACTAGAGTTCACATTCAAGCAATGGAAGGAAGGCTTAAAAGGACTGAGCAGAAACAGCAGCAGACGATGAATTTCTTGGCCAGGGCAATGCAGAATCCCAACTTCGTGCAACAATTGGTTCAGCAAAAGGAGCTGAGAAAGGAGCTGAAGGAAGCTTTTTCTAAGAAGAGGAGGAGTCTTGATCAAGGGCCTAGTAATGTTGTTGAAATAGGAGAGTTAGATTGCGGTGAAGAGTACTCAAGTTTGGTTAAACTTGAAGCACAAGTGTTGGATTTTGAGGTACCAGATCTTGACCTTGGTTTGAATCTGGGGGAGCAAATTGGAAGCCAGAAGAGAATGGAGGAAGTAGAAAGTATGGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTGAATGAGGGCATTGAAGAACAAGGTGTAATGGGTGTAGATGTATTGGCTCGGCAACTTGGTTATTTGGCCTCAAGTTCCAAATAG 1035 0.4425 MNPQGPVKEEFLGESSSFYAGYDPPPIMIVPQPVQGLHQTAPPPFLTKTYDIVDDPSTNHIISWSKGNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKSIRRRKTNHQSHAMQQGVDPCVEVGLFGLDGEVDRLKRDRQVLMAELVKLRQQQQNTRVHIQAMEGRLKRTEQKQQQTMNFLARAMQNPNFVQQLVQQKELRKELKEAFSKKRRSLDQGPSNVVEIGELDCGEEYSSLVKLEAQVLDFEVPDLDLGLNLGEQIGSQKRMEEVESMDKDIDEVFWQDLLNEGIEEQGVMGVDVLARQLGYLASSSK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2323 344 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vra8g2323 344 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 8 327 - -
Vra8g2323 344 Coils Coil 162 182 - -
Vra8g2323 344 Gene3D - 37 136 IPR036388 -
Vra8g2323 344 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2323 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 327 IPR027725 -
Vra8g2323 344 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2323 344 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2323 344 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2323 344 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2323 344 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2323 Vra-Chr8 41475911 41478113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2323 20 343 HSF AT3G22830 53.678 3.70e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra8g2323 HSF_DNA-bind 1.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2323 K09419 - gmx:100809515 538.88