Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2318 ATGGAAGAAGAGAGTGAATGCTTCGAGTGCCTCCAACTTCGAATAAAATCGGATTTCTCGGAGCAAGTGTTTTTCAATTATGCCATCTCCAATTCTGCTTTTCCTTTCGGATCCTCAGCTATCGTCAATATTTCTGGTACTACTGATGGAGAAGCTTCGGGCGGTCAATTTATATTGCAATACATGCCGAGTCGTGATAAGAATTGTTTTATCAATTATGTAAATGAATATAGTTTGGACAGTGGTGAAATTACTACCGGGAGTGGTGATCCTGATATTGGTGGAAGTAAAAATAATGTTATTAAGGGTAGAATTACTTCATCAGATGATTCTGACTGTGGCAAAGCTTTTTCTGGAAACACAAATTGTAGTCATTCTGGAAGGTTTTCTTGCTTGAGGACAATCACCTCACTCTTGCCGATTGCTCATGTGGGAAATTCTTCCTATTCTACGTTTCAAAAGGTGTCCTCTGATTTCTTGTCCGGGCTAATCGAAGACCATGTCTTAAATTCACTTTATCTCTTCATTGAAGAGAAAGGATCTGGACGGGACAGTATAAATTTCCTGGGTTTAATTGGGTTGCCATCATTTGAAGAGGATGTTTTGCCAGGCTCTTTGAGGCATCCCAACATAGCTCCAGCCCTTGCAATTTTTGAAACATCCGATCATGTTAATGTGGTGCTTCCAAAAACTCCATACAACTTGGAAAGTATTCTTCATTTTAATCCCAATTCCTTAAAATCTGATTGGAATAGAAGATTTCTTATATATCAACTACTCTCAGCCTTATCGTACGTACATGGTTTAGGGGTTTCTCATGGTAATATATGTCCATCCAATATCATGTTGACTGATTCGTTATGGTGTTGGCTGAGATTATGGAGTGAGCCCGTATTGGAATCTAATTTAACTTCGCAGGAGAGTGAAAGCGTTAATTCTGAACCTGCAAGAATTGGTTGTTGTAATGTTGGTTGTCATTCTCATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATGCTTGCTTTCAGCAGTGGTGGAGAGGAGAAATAAGTAATTTTGAATATTTACTCATCTTAAACAGATTAGCAGGAAGGAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGATAATTGTGATGTAGGGTGGCGCGACTTGAGCAAGAGTAAATGGCGCTTGGCAAAAGGCGATGAACAATTGGATTTCACATATTCAACATCTGAAATCCCTCATCATGTTTCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGACTGCCTTTGAGTGTTCTGAGAATGGCTGTTCGTTCTGTGTATGAACCTAATGAGTATCCTTCCACAATGCAGAGGCTCTATCAATGGACTCCCGATGAATGCATTCCAGAGTTTTACTGTGATGCTCAAATATTTATATCAATACATGATGGTATGGCTGATTTGGCTGTACCCTCTTGGGCAGAGAGTCCTGAGGATTTCATTAAATTGCATTTTGATGCATTAGAAAGTGATAGAGTGTCATTTCAGCTCCATCACTGGATAGATATAACCTTTGGTTACAAAATGTCTGGCCAGGAAGCTATCGCTGCTAAGAATGTTATGCTTCCTCTATCAGAACCCTCAATGCCAAGATCAACAGGACGTCGTCAGCTCTTTACACAACCACACCCTATACGTCATGCCACTACCAAAACAAAACGTCACAGTTCCAATAAATATGCCAAAGTTTGGAGTCAGGCATATGAAATGCACAGAGAGACATCTCTTCTGGCTGGAACTGCTTATCTACAAGAACTAGAGCAAGCATCTAAATTTTCTGAACATGCTAGGCATTTGAATGCCTGTTACCGTTATCCCTCAAATCAAATGACAGGGAAAAACATCTCATCTTTGGGAGATCCAACAACAAATACATTTAGTGAAAATATAAGCAAACTATCTTTGATTGACAGAAATTACCATGTACCTAATAAAATAAATCTAATTTCTTTTCTTCAACATATGAAAGAGGAAGATGAAGGCTCCTTAGGGTATCCAGACTTGCTACTCTGGAAGCAGAAATTATCTTCTTCAAGACTTTGCTCTGAAGATGTTGCTGGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTCCAGGCCACTCTTTGATCCAATCTCATTGTCAATATACTTGGAAGATGGAACCTTTCCAGGATTTCTGCAGGATCTACCTCCTAATGTTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCTTCTACCAAATTTCTTCTGGAATCACCTTATTTTCCAAAGAGTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGACGAAACTCGTCTTCGTTATGCTGCAAATCTTGCAAAGCATGGAGCCCTCAGGGAAATGGGTGCATTCGCAACTGAAATGTGCACTACTTATTGCTTACCGCTTATAGTGAATGCTGTGAGTGATGTTGAAGCTGAATGGGCATATATGCTTCTGAAGGAATTCATGAAATGCTTAACAGTGCCAGCAGTGAAAACAATAATCCTGCCAACAGTACAGAAAATTTTACAGACCACAGGTTATTTACGTTTAAAGGTTGCACTTCTACAAGATTCATTTGTGAGGGAAATATGGAATCAAGTTGGTAAACAAGCATACCTGGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACAATTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTGCTTCTAATCAGTTCTAGCGAGGAGCTTGGAGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATCTGCGGATGGCATTGATGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATTGTTTATTGTCAAACAGATGGTACCTTTACTCAAAAATGTTGTTCGTTCCTTCATTGATGTGTCATGCATGAATAAGCCCGATCCTGTCCAGAGTTGGACTGCTTTGGCACTTATTGATTGCATGATGACTTTAGATGGCCTTGTAGCTTTCCTGACAGAAGAGGTCATTGTAAAGCAGCTTCTTGAAGATCTAAGTTGCATACACATAGGGCTTCTTATGCAGAAACATATGGACATTGCAGTGCTTCAGATTGCTGCCTCTACTCTTTTTGGAATTTGTCAGAGGATTGGAGCAGATTTGACAGCTTTACATATTCTTCCAAAACTTAAAGAACTATTTGATGAGCTGGCTTTCTCCCAGGAAGTTTCTAAAGGTTCAACTACTGTTGGCAAAAACTTGAAGGCTAGCAAAATAAAAATTGGAGGGGACTTGCACATTGAAAGTCGTATGGATCTAGTGTTGGTACTCTATCCTTCCTTTGCATCTCTTCTAGGGATAGAGAAACTTCGTCAATGCTGTGCTACTTGGTTGATTCTTGAACAGTATCTTCTACATCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAATGGTTCAGAAATTATTCTTGCTAGAAGACCTGTAACATCCCAAGGATTTACATCTGATTACAATCCTGCAAAGCTGTTGCTTAATGGAGTTGGATGGTCAATTCCACAATCCCAAGGAAGTAGAAGTGCCAAAAATTTGATTCCTCAAAGACGACCATTTAAAGTTCGTCAAAGTCCAGTAGTAGTGCATGAAGGAATGACATACCAAATGAACCAAGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGGATTCAGAAAGATGATCTTCCATGGAAGATCAGAGCATCTGTTATATACTCTATACGTGCACATCAGGGAGCACTAAGGTCTCTGGCTGTTAACCAAGATGAATGCACTGTTTTTACTGCTGGAATTGGTCAAGGATACAAGGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTCTGTCCGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCGTCTTATCAAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCACATTTGGAATAGCCAAACAGGGAAGCAAATATTAGTATTTTCTGAGTCGCAAACAGAATCTAGCCATCCTACAAGCCATCCATCCTCTGCATCAAAGATAAATAGTGACCAGGCAAATGTGCTAAATTTGAATACACTATCAAATGGAATATTGTCTAGTGCTTTCGACTCAAGTCTTTATACTTGTATGCATCAATTATACTCCACTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTGAGGTTCATTGATGTTTCTCGAGGCCAAAAGCTTCATATCTGGAGAGGCGAATCTACAGAATCTAGTTTTCCTTCACTTATTTCTGCCATCTGCTCTACTGGCTCTGACAAGATGCAAGCAGGTGGAATTTCCTCTTTGCCATCTTTTATTGCAGCGGGGCTAAGTTCTGGTCACTGTAAATTATTTGATGCTAAGAGTGGAAATGTCATTAGCTCTTGGCGAGCTCACGATGGATACGTGACAAAGTTGGCAGCACCTGAAGAACATCTGCTCATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTAAGAATGAATTTGCCGTCGCAGCCCGTTATTTTCAGAGGTCATTCAGATGGTATATCCAGCTTCTCCATTTGGGGCCATGATGTTATTTCAATTTCCCGGAGTAGGATTGGGCTTCTCTCCTTGTCTAAATCTGTCAACGAAACAGATGGGCAGCACCATATTATCCCCCAGAGACTCTACGTTTCTGATAACGGTCAGAGAAGCTTGTCAGCGTTATCAAGTATTAGTATACTTCCCTTTTCCCGATTGTTTCTCATTGGAACCGAAGATGGTTATCTTAGAATCTGTTGTTAA 4974 0.4051 MEEESECFECLQLRIKSDFSEQVFFNYAISNSAFPFGSSAIVNISGTTDGEASGGQFILQYMPSRDKNCFINYVNEYSLDSGEITTGSGDPDIGGSKNNVIKGRITSSDDSDCGKAFSGNTNCSHSGRFSCLRTITSLLPIAHVGNSSYSTFQKVSSDFLSGLIEDHVLNSLYLFIEEKGSGRDSINFLGLIGLPSFEEDVLPGSLRHPNIAPALAIFETSDHVNVVLPKTPYNLESILHFNPNSLKSDWNRRFLIYQLLSALSYVHGLGVSHGNICPSNIMLTDSLWCWLRLWSEPVLESNLTSQESESVNSEPARIGCCNVGCHSHGLYADLKLSPTIDWHACFQQWWRGEISNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDVGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFISIHDGMADLAVPSWAESPEDFIKLHFDALESDRVSFQLHHWIDITFGYKMSGQEAIAAKNVMLPLSEPSMPRSTGRRQLFTQPHPIRHATTKTKRHSSNKYAKVWSQAYEMHRETSLLAGTAYLQELEQASKFSEHARHLNACYRYPSNQMTGKNISSLGDPTTNTFSENISKLSLIDRNYHVPNKINLISFLQHMKEEDEGSLGYPDLLLWKQKLSSSRLCSEDVAGDIFSIGCLLAELHLSRPLFDPISLSIYLEDGTFPGFLQDLPPNVRLLVEACIQKDWTRRPSTKFLLESPYFPKSVKSSYLFLAPLQLVAKDETRLRYAANLAKHGALREMGAFATEMCTTYCLPLIVNAVSDVEAEWAYMLLKEFMKCLTVPAVKTIILPTVQKILQTTGYLRLKVALLQDSFVREIWNQVGKQAYLETIHPLVLSNLYNSPDKSSAASASVLLISSSEELGVPITIHQTILPLVHCFGKGLSADGIDVLVRIGGIFGELFIVKQMVPLLKNVVRSFIDVSCMNKPDPVQSWTALALIDCMMTLDGLVAFLTEEVIVKQLLEDLSCIHIGLLMQKHMDIAVLQIAASTLFGICQRIGADLTALHILPKLKELFDELAFSQEVSKGSTTVGKNLKASKIKIGGDLHIESRMDLVLVLYPSFASLLGIEKLRQCCATWLILEQYLLHHHNWKWEYAGESSKNGSEIILARRPVTSQGFTSDYNPAKLLLNGVGWSIPQSQGSRSAKNLIPQRRPFKVRQSPVVVHEGMTYQMNQEPWFWFPSPATIWDGPEFLGRVGIQKDDLPWKIRASVIYSIRAHQGALRSLAVNQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICVLSSGRVASCDGTIHIWNSQTGKQILVFSESQTESSHPTSHPSSASKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHQLYSTETLVVGTGNGSLRFIDVSRGQKLHIWRGESTESSFPSLISAICSTGSDKMQAGGISSLPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLISSSLDRTLRVWDLRMNLPSQPVIFRGHSDGISSFSIWGHDVISISRSRIGLLSLSKSVNETDGQHHIIPQRLYVSDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC* 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2318 1657 SUPERFAMILY BEACH domain 329 578 IPR036372 -
Vra8g2318 1657 Pfam WD domain, G-beta repeat 1343 1377 IPR001680 GO:0005515
Vra8g2318 1657 Pfam WD domain, G-beta repeat 1523 1559 IPR001680 GO:0005515
Vra8g2318 1657 CDD PKc 205 286 - -
Vra8g2318 1657 ProSitePatterns Trp-Asp (WD) repeats signature. 1546 1560 IPR019775 -
Vra8g2318 1657 Gene3D - 1500 1657 IPR015943 GO:0005515
Vra8g2318 1657 Gene3D - 1292 1499 IPR015943 GO:0005515
Vra8g2318 1657 ProSiteProfiles BEACH domain profile. 334 603 IPR000409 -
Vra8g2318 1657 ProSiteProfiles Trp-Asp (WD) repeats profile. 1528 1561 IPR001680 GO:0005515
Vra8g2318 1657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1528 1561 - -
Vra8g2318 1657 PANTHER GH12955P 1 1657 - -
Vra8g2318 1657 SUPERFAMILY Protein kinase-like (PK-like) 205 291 IPR011009 -
Vra8g2318 1657 Gene3D Transferase(Phosphotransferase) domain 1 698 798 - -
Vra8g2318 1657 Gene3D BEACH domain 338 585 IPR036372 -
Vra8g2318 1657 SUPERFAMILY Protein kinase-like (PK-like) 716 791 IPR011009 -
Vra8g2318 1657 Pfam Beige/BEACH domain 347 560 IPR000409 -
Vra8g2318 1657 SMART WD40_4 1295 1338 IPR001680 GO:0005515
Vra8g2318 1657 SMART WD40_4 1622 1657 IPR001680 GO:0005515
Vra8g2318 1657 SMART WD40_4 1410 1459 IPR001680 GO:0005515
Vra8g2318 1657 SMART WD40_4 1341 1377 IPR001680 GO:0005515
Vra8g2318 1657 SMART WD40_4 1521 1559 IPR001680 GO:0005515
Vra8g2318 1657 Gene3D Transferase(Phosphotransferase) domain 1 199 297 - -
Vra8g2318 1657 SUPERFAMILY WD40 repeat-like 1298 1655 IPR036322 GO:0005515
Vra8g2318 1657 SMART Beach_2 346 578 IPR000409 -
Vra8g2318 1657 Pfam Protein kinase domain 204 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2318 1657 CDD Beach 347 578 IPR000409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2318 Vra-Chr8 41434930 41444236 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vra8g2318 Beach 4.7e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2318 K17601 - gmx:100809116 3007.62