Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2314 ATGCAGCTTCTTCACTCCGACGAACCCGCGTCCGAGCGGCGCGAGTCGCCGGAGAAGCCCGAGGATTCTAGCACTTTCTCCGATTCTCTGGACTCCGAAACCGACGAAAGCGCGGCTCTCGACTTCACCGGGAAGAGCGTGGAGTTTCCGGAGGCGGAGAACGCCGAGGACTCGGCGGAGAGCCTTTACGTGTACAAGAACATTTACAGTCTTATTCCGAAGTCGGTTTCGCGCCTAGCACAATTGCGAACGCTTAAATTCTTCGGAAACGAGATTAACCTGTTCGCGCCAGAGGTTGGGAACTTCACGGCGTTGGAAAGCTTGCAGATGAAGATTTCCTCGCCGGGGATCGGAGGCTTGCCGTTGCACTCGCTCCAGGGTTTGAAGGAACTCGAACTCTCCAAAGGACCTCCCAGAACGTCTGCTTTTCCGATTTTGACAGAGATTTCTGGTCTCCAGTGTTTGACCAAGCTTTCCATTTGTCATTTTTCCATAAGATACCTTCCTCCGCAAATTGGATGCCTGAAAAAACTGGAGTATCTTGATCTTTCGTTTAATAAAATGAAGACGTTGCCAGTGGAGATTAGTTACTTGAGTGGCTTGATATCCATGAAAGTTGCGAATAATAAATTGATGGAGCTGCCGTCAGCTATATCTTCTCTGTCAAGACTGGAGAGTTTGGACCTGTCGAATAATAAGTTGACTTCGTTAGGGTCCCTTGAACTTGCCTCCATGCATAGACTTAAGAAGTTAAATCTTCAGTACAACAAGCTTCTCAGGACTTTTCAAGTTCCTTCATGGATATGTTGTAATATGGAGGGAAATGATGAAGCTAGATGCAAAGATGATTGTAGCAGCTCTTCTGTTGAAATGGATCTCAATGAAAGCAACTTTCAGGAAAATGACGAAACCCTTTCTGAGGGTTGTCAGCATATGTCATCAACCATGCTAACAAGCTCCTCATCCAGTAGTAGATGTTTTGTATCCCGGAAGTCGGGTAAGCGGTGGAAAAGACGGTATTATTTACAGCAGAAAGCTCGTCAAGAGCGCTTGAACAATAGTAGGAAGTGGAAAGCTGTAGATCATGACCAGTTGTTGAGCAAGAAGATTCACAAAATTTCTGAACTAGGAAATTGTGATAGTCTTGATTCTGAAACTCGTTCAGAAATTGTATCGGAGAATGGGAACCTGGATGATAATAAAAGAATATTTTCTGAACAAGGAATAAATGACAATGAAGTTGATAATGTTAACAATGATGAAGTAATTATTGAGAAGCGCTTTTCTGGGGAAGATTGCTGCACTACTGAAAGCAAAGATGAAAAGGATGCATGCTTGTGCTCCATAGAGAACAAGCAAAGTGAACAGGATGAAGTATCGTGTTTTGAACTTTTAGAGTGTGTTTCTAAATCAAAGAGACATTTAGACCGTGATCTTGATAATCCTAAACCGTGCAAGTCTAGAAAATCTATTAGTACTTGTTCATCATTGTCTAACAAGTACAGCAAGATCTCATTTTGTGGCATTGAAGACCATCTATCAGATGGATTTTATGATGCAGGACGAGATCGGCCATTTTTTCCTCTAGAGAGATATGAGCAAAATCAGTGTCTTGCTTCTCGTGAAGTCATCCTTTTAGACAGAAAAAGAGATGAAGAGTTGGATGCTGTTTTGCTAGCTGCGCAGGCATTGGTCCATAATTTGAATCAGTTAAATGGTTTAAACAGACATGGGAACCAGGATGTGGTTGATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAGAGGTGCTATCATAGAACAGACACGGAAATCTGTGTCTGGTTCAAACTATAATAAACCTTTTATCTGTACATGCTCGGTTGGAAGCAGCAACAGTATAAGGGCTTCCACCGAACCAGTTGTAAACACCATAGAAGATATTACTCTCTCTAAGACATGTGAGAAATCTCTGGACTCTATTAAAAAAAGGCGAAATTCAATCATAGTTCCAATTGGCTCCGTGCAGTATGGTGTATGCAGACACAGAGCTCTGCTTTTCAAGTATTTATGTGATCACATGGAGCCACCAATTCCTTGTGAGCTTGTCAGGGGTTACCTAGATTTTTCACCACATGCCTGGAATATTGTTATGATTAAGAGGGGTGCCAAGTGGGTTCGAATGCTGATTGATGCTTGTCGACCTCTTGATATAAGAGAAGAGAAAGATACTGAATACTTTTGCAGGTATATACCTCTTAATCGAACCACGATCCCTCTTTCTTCTAGAGGAATTCCAGATTCTGATTATTCGGTTCCATCACTTACTGCATGCGATGAGCTTGAGACAAAAGCTTCAACTACTTTAATTAAATGCAAAATTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGGCAGCTCAGGGGAGTTCGGCTGACAAAATTAAAAACTTCGAGTATAATTGTCTGGGAGAAATAAGAATTCTTGGTGCTTTAAAACACCCCTGCATAGTGGAAATGTATGGACACAGAATGTCATGTCAATGGTCTGTCTCAGCCGATGGTAATCCTGAACACCGTGTGTTAAGATCTGCCATTTTTATGGAGTATGTGGAAGGGGGCTCTTTAAAAAACTATCTGGAGAAGCTGTTAGAAACTGGAAAAACGTATGTTCCTGTGGAGTTGGCTTTGCATGTCGCTAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCAAGGCACATAATTCATCGTGACATAAAAAGTGAAAATATTCTGCTTGATTTGGATAGGAAGAGAGACAATGGAGCTCCCACTGTAAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGCATGTTGTATTGCTCATGTGGGAACACCTCCTCCCTGTGTATGTGTTGGAACACCTAGGTGGATGGCTCCAGAGGTTATGCGGACTATGTACGAAAAAAAATCTTATGGATTGGAAGCGGACATTTGGTCGTTTGGATGTTTACTTCTGGAGATGCTTACTTTGCAAATTCCATATTATGGGCTTTCTGATTCACACCTCCTTGATAGTCTGCAGATGGGTAAACGACCACGGTTAACTGATGAGCTGGAGGCATTGAGTTCAATGGACGAACCCTCAATGATTCCATCCGGTGAAGAAATAGAAAAATCAGATCTTGAGGTTGACATGTTGAAATTCCTTGTTGATTTGTTTCACAAGTGCGTAGAAGAAAATCCTAACAAGCGTCCTACTGCTGAAGAAATCCATAAAATGCTGCTTGCACACACACAAAGATCGATTACAAGTTTAAGATTATAG 3339 0.4217 MQLLHSDEPASERRESPEKPEDSSTFSDSLDSETDESAALDFTGKSVEFPEAENAEDSAESLYVYKNIYSLIPKSVSRLAQLRTLKFFGNEINLFAPEVGNFTALESLQMKISSPGIGGLPLHSLQGLKELELSKGPPRTSAFPILTEISGLQCLTKLSICHFSIRYLPPQIGCLKKLEYLDLSFNKMKTLPVEISYLSGLISMKVANNKLMELPSAISSLSRLESLDLSNNKLTSLGSLELASMHRLKKLNLQYNKLLRTFQVPSWICCNMEGNDEARCKDDCSSSSVEMDLNESNFQENDETLSEGCQHMSSTMLTSSSSSSRCFVSRKSGKRWKRRYYLQQKARQERLNNSRKWKAVDHDQLLSKKIHKISELGNCDSLDSETRSEIVSENGNLDDNKRIFSEQGINDNEVDNVNNDEVIIEKRFSGEDCCTTESKDEKDACLCSIENKQSEQDEVSCFELLECVSKSKRHLDRDLDNPKPCKSRKSISTCSSLSNKYSKISFCGIEDHLSDGFYDAGRDRPFFPLERYEQNQCLASREVILLDRKRDEELDAVLLAAQALVHNLNQLNGLNRHGNQDVVDNLQTASLLALFVSDHFGGSDRGAIIEQTRKSVSGSNYNKPFICTCSVGSSNSIRASTEPVVNTIEDITLSKTCEKSLDSIKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPIPCELVRGYLDFSPHAWNIVMIKRGAKWVRMLIDACRPLDIREEKDTEYFCRYIPLNRTTIPLSSRGIPDSDYSVPSLTACDELETKASTTLIKCKIGSVEAAAKVRTLAAQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHRMSCQWSVSADGNPEHRVLRSAIFMEYVEGGSLKNYLEKLLETGKTYVPVELALHVAKDVSCALSELHSRHIIHRDIKSENILLDLDRKRDNGAPTVKLCDFDSAVPLRSTLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYEKKSYGLEADIWSFGCLLLEMLTLQIPYYGLSDSHLLDSLQMGKRPRLTDELEALSSMDEPSMIPSGEEIEKSDLEVDMLKFLVDLFHKCVEENPNKRPTAEEIHKMLLAHTQRSITSLRL* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2314 1112 Pfam Ethylene-responsive protein kinase Le-CTR1 652 725 - -
Vra8g2314 1112 SUPERFAMILY Protein kinase-like (PK-like) 795 1099 IPR011009 -
Vra8g2314 1112 Gene3D Transferase(Phosphotransferase) domain 1 782 1110 - -
Vra8g2314 1112 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Vra8g2314 1112 Pfam Protein kinase domain 817 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2314 1112 MobiDBLite consensus disorder prediction 1 45 - -
Vra8g2314 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Vra8g2314 1112 SMART LRR_sd22_2 175 200 - -
Vra8g2314 1112 SMART LRR_sd22_2 221 242 - -
Vra8g2314 1112 Gene3D Ribonuclease Inhibitor 41 291 IPR032675 -
Vra8g2314 1112 ProSiteProfiles Protein kinase domain profile. 786 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2314 1112 SUPERFAMILY Cysteine proteinases 679 737 IPR038765 -
Vra8g2314 1112 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vra8g2314 1112 MobiDBLite consensus disorder prediction 1 26 - -
Vra8g2314 1112 SMART serkin_6 782 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2314 1112 PRINTS Leucine-rich repeat signature 178 191 - -
Vra8g2314 1112 PRINTS Leucine-rich repeat signature 221 234 - -
Vra8g2314 1112 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 60 1104 - -
Vra8g2314 1112 SUPERFAMILY RNI-like 62 260 - -
Vra8g2314 1112 Pfam Leucine rich repeat 203 258 IPR001611 GO:0005515
Vra8g2314 1112 SMART LRR_typ_2 221 244 IPR003591 -
Vra8g2314 1112 SMART LRR_typ_2 175 198 IPR003591 -
Vra8g2314 1112 SMART LRR_typ_2 79 102 IPR003591 -
Vra8g2314 1112 SMART LRR_typ_2 245 271 IPR003591 -
Vra8g2314 1112 SMART LRR_bac_2 221 240 - -
Vra8g2314 1112 SMART LRR_bac_2 198 217 - -
Vra8g2314 1112 SMART LRR_bac_2 175 194 - -
Vra8g2314 1112 PANTHER BNAC08G43810D PROTEIN 60 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2314 Vra-Chr8 41405560 41414520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2314 830 1111 MAP Kinase Kinase Kinase AT2G24360 27.113 1.05e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Vra8g2314 Pkinase 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2314 - - gmx:100811118 1861.27