Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2311 ATGGCCAGTAAAAACGAAAGCGACAATTCAACCCATACTTCTCCATCATCGCCGAAGAACACATACAAAGATCCAGATGATGGGCGGCAACGGTTTTTGCTTGAATTGGAGTTTGTTCAGTGCCTTGCCAATCCTACCTATATCCACTATTTGGCTCAGAATCGTTATTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAGCGCCCTGAATATATTAAATTTATCATGTATCCTCATTGTCTTTATTTTCTTGAGCTGCTTCAGAATGCAAACTTTCGCAATGCAATGGCACATCCTATCAATAAGGAACTGGCACATAGACAACAATTCTACTTCTGGAAGAATTATAGGAACAATCGGCTAAAACACATTTTACCAAGATCACTTCCTGAACCTAGTGCCACATCTGCAGTTCCTGCTCCCCTTTCAACTCCAGCTCAGGCACCTGCATCTGCACTACCACCAGTACCTTCTACAAGCGTTGCTGTCACAACAACACCTACGCAAGCTCCTTCCCCTATGTCGTACGGTATGCCCCCTGGCTCTGGTCTAGCTAAAAATGACATGAGGAATCCCACAGTTGACAATAGAAGGAAGAGAAAGTGA 624 0.4295 MASKNESDNSTHTSPSSPKNTYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPINKELAHRQQFYFWKNYRNNRLKHILPRSLPEPSATSAVPAPLSTPAQAPASALPPVPSTSVAVTTTPTQAPSPMSYGMPPGSGLAKNDMRNPTVDNRRKRK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2311 207 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g2311 207 MobiDBLite consensus disorder prediction 159 178 - -
Vra8g2311 207 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g2311 207 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 207 - -
Vra8g2311 207 MobiDBLite consensus disorder prediction 137 207 - -
Vra8g2311 207 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Vra8g2311 207 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vra8g2311 207 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 1 207 IPR008831 GO:0003712|GO:0006355|GO:0016592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Vra8g2311 Med31 4.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2311 K15153 - gmx:100527879 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2311 8 41353819 41356593 Vra8g2311 8 41353819 41356593 ECH