Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2309 ATGGAAGATAATGGCCTGGCGCCGTTGTTTTATGTTGGCCACCACAAGTTGAAGCTTCTCATGTCTCCTCTTCTGCTCATGCTCTTCCTTCTCTTTCCATTTGCTTTGCCCCTCAGCGAAGAAGGACAAGCATTAATGGCGATGAAGGCCACTTTCAGCAATATGGCAGACGTGCTTCTTGACTGGGATGACGTCCACAATGACGACTTTTGCTCTTGGCGTGGAGTTTTCTGCGATAATGGCAGCCTTACTGTGATTTCTCTGAACTTGTCCAGCTTGAACCTCGGCGGGGAGATATCCCCAGCCATTGGTGACTTGAGAAACTTGCAGTCCATAGACTTGCAAGGGAATAAATTAACGGGGCAAATCCCAGATGAAATTGGAAACTGTGCAGCACTTTTTCTTTTGGATTTGTCTGATAATCACCTTTATGGTGATATACCTTTCTCCCTGTCAAAGCTAAAGCAACTTGAGTTTTTGAATTTAAAGAATAATCAGTTAACTGGCCCTATCCCTTCAACTCTAACCCAAATTCCAAATCTCAAGACTCTTGATCTTGCTCGAAATAGGCTCACTGGAGAGATCCCCAGATTACTCTATTGGAATGAAGTCTTGCAGTACCTTGGGTTACGAGGAAACATGTTGAGTGGTACTCTGTCTCCTGATATATGTCAATTAACTGGATTGTGGTATTTTGATGTGAGAGGCAACAATTTGACTGGTACTATACCTGACAGCATAGGGAACTGTACAAGTTTTGAAATCTTAGACATATCATATAATCAGATTACTGGAGAGATTCCATATAATATTGGATTTCTGCAAGTTGCTACTTTGTCACTTCAAGGGAATAGATTAACTGGGACAATTCCAGAAGTGATTGGTTTGATGCAAGCCCTTGCAATATTGGATTTGAGTGAGAATGAGTTAGTGGGATCAATTCCCCCAATACTTGGGAATCTGACCTTCACCGGAAAGCTGTACCTTCATGGAAACATGCTTACTGGCCCGATACCTCCTGAACTAGGCAATATGTCCAAACTGAGCTACTTGCAATTGAATGACAACCACCTAATTGGAAAAATTCCAAATGAGTTTGGGAAGCTAGAACATCTTTTTGAATTGAATCTTGCCAATAATCATTTTGATGGAACTATTCCACGTAACATAAGCTCCTGCACAGCCTTAAATCAGTTTTTTACTTTCAGTAATGTGCATGGTAATCAGTTGAGTGGTTCCATTCCATTGAGCTTCCGCAACCTTGGTAGTTTGACATACTTAAACCTCTCTGCGAACAACTTCAAGGGGACCATACCTGTTGAGTTGGGGCATATTATTAATCTAGATACATTGGATCTATCTTGCAATAATTTTTCAGGACTTGTTCCCGCATCTGTTGGTTATCTGGAACATCTCTTGACCCTCAACTTAAGTCACAACCACCTTGGAGGTTCCTTGCCTGCTGAATTTGGGAATCTCAGAAGCATTCAAATTCTTGATATGTCATTCAACAATCTCTCTGGTAGCATTCCTCCGGAAATTGGACAGCTGCAGAACCTGATGTCTTTGATTATGAACAACAATGATCTGCGAGGGAAGATTCCTGATCAGATGACTAATTGTTTTAGTCTTACACTATTAAATTTGTCCTATAACAACCTTTCCGGAGTAATTCCTTCAATGAAGAACTTTTCAAGGTTTTCAGCTGACAGCTTCTTCGGAAATTCATTATTATGTGGAGATTGGGTGGGATCAATATGTCGTCCTTACATTCCAAAATCAAGAGTGATTTTCTCCAGAGTTGCTGTAGTATGTCTCACGCTTGGAATTATGATATTGTTAGCCATGGTCATTGTAGCCTTCTATAGATCCAGCCAATCTAAACAATTGATGAAGGGATCTAGCAGAACTGGGCAAGGTCCTCCAAGACTAGTTATTCTGCACATGGATATGGCTATCCACACCTTGGATGATATTATGAGAAGCACTGAGAATCTCAATGAGAAATATATCATAGGTTATGGTGCCTCTAGTACTGTATACAAATGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAGCGACTGTATAACCAACACCCACACAATTTAAGGGAGTTTGAGACCGAACTTGAGACAGTTGGTAGCATCAGACATAGAAACCTTGTCACCTTGCATGGATATGCACTCACTCCCGATGGAAATCTTCTTTTCTATGACTATATGGCGAATGGGTCATTGTGGGATCTTCTACACGGTCCCTCGAAGGTAAAACTTGACTGGGAAACACGCCTGAGGATTGCTGTTGGAGCAGCCGAAGGACTGGCTTATCTCCATCATGATTGTAACCCGCGAATAGTTCACAGGGACATTAAATCTTCGAATATTTTGCTGGATGAGAACTTTGAGGCTCATCTCTCTGATTTCGGTACTGCAAAATGCATCTCGACCTCGAGAACTCATGCATCGACCTATGTCCTTGGAACTATTGGCTATATTGACCCTGAGTATGCCCGGACATCTAGGCTGAATGAAAAATCAGATGTGTATAGCTTTGGCATAGTTCTTTTGGAACTACTGACTGGAAAGAAGGCAGTGGACAATGAGTCTAATTTGCATCAATTGATATTGGCCAAGACAGATAACAACACTGTAATGGAGGCTGTTGATGCAGAGGTGTCTATAACCTGCATTGATCTAGCTCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACGAAAAAGAACCCTTCTGATAGGCCTACCATGCATGAAGTAGCCAGGGTTCTGGTATCACTGCTTCCTTCACCTCCAAGTAAGATCCTTGCTCCACCTGCAAAGAAATTTGACTATGCCCATTTTGTGATCGAGAAGGGACAACCTCGAAAAGTGGAAGGACAACCTCACCAAGAAGATAACAACTCAACCAATGCTCAATGGTTCGTTCGCTTTGGGGATGTTATATCCAAGAGCACTTGA 2982 0.4178 MEDNGLAPLFYVGHHKLKLLMSPLLLMLFLLFPFALPLSEEGQALMAMKATFSNMADVLLDWDDVHNDDFCSWRGVFCDNGSLTVISLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCAALFLLDLSDNHLYGDIPFSLSKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNRLTGTIPEVIGLMQALAILDLSENELVGSIPPILGNLTFTGKLYLHGNMLTGPIPPELGNMSKLSYLQLNDNHLIGKIPNEFGKLEHLFELNLANNHFDGTIPRNISSCTALNQFFTFSNVHGNQLSGSIPLSFRNLGSLTYLNLSANNFKGTIPVELGHIINLDTLDLSCNNFSGLVPASVGYLEHLLTLNLSHNHLGGSLPAEFGNLRSIQILDMSFNNLSGSIPPEIGQLQNLMSLIMNNNDLRGKIPDQMTNCFSLTLLNLSYNNLSGVIPSMKNFSRFSADSFFGNSLLCGDWVGSICRPYIPKSRVIFSRVAVVCLTLGIMILLAMVIVAFYRSSQSKQLMKGSSRTGQGPPRLVILHMDMAIHTLDDIMRSTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQHPHNLREFETELETVGSIRHRNLVTLHGYALTPDGNLLFYDYMANGSLWDLLHGPSKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTSRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILAKTDNNTVMEAVDAEVSITCIDLAHVKKTFQLALLCTKKNPSDRPTMHEVARVLVSLLPSPPSKILAPPAKKFDYAHFVIEKGQPRKVEGQPHQEDNNSTNAQWFVRFGDVISKST* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2309 993 SUPERFAMILY Protein kinase-like (PK-like) 644 931 IPR011009 -
Vra8g2309 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 29 968 - -
Vra8g2309 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 29 968 - -
Vra8g2309 993 Gene3D Ribonuclease Inhibitor 325 589 IPR032675 -
Vra8g2309 993 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
Vra8g2309 993 SMART serkin_6 666 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2309 993 Gene3D Phosphorylase Kinase; domain 1 632 741 - -
Vra8g2309 993 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Vra8g2309 993 SMART LRR_typ_2 226 250 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 106 130 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 421 445 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 469 492 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 297 321 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 345 368 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 369 393 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 493 517 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 178 202 IPR003591 -
Vra8g2309 993 SMART LRR_typ_2 154 177 IPR003591 -
Vra8g2309 993 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515
Vra8g2309 993 Gene3D Ribonuclease Inhibitor 201 317 IPR032675 -
Vra8g2309 993 Pfam Leucine Rich repeat 249 266 IPR001611 GO:0005515
Vra8g2309 993 Pfam Protein kinase domain 668 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2309 993 ProSiteProfiles Protein kinase domain profile. 666 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2309 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Vra8g2309 993 Gene3D Transferase(Phosphotransferase) domain 1 742 939 - -
Vra8g2309 993 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vra8g2309 993 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Vra8g2309 993 Pfam Leucine rich repeat 447 506 IPR001611 GO:0005515
Vra8g2309 993 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515
Vra8g2309 993 SUPERFAMILY L domain-like 40 274 - -
Vra8g2309 993 SUPERFAMILY RNI-like 220 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2309 Vra-Chr8 41341917 41349454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2309 108 993 Receptor kinase-like Gene Family AT5G07180 77.114 0.0 1366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vra8g2309 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2309 K20718 - gmx:100811653 1750.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2309 8 41341917 41349454 Vra8g2309 8 41341917 41349454 ECH