Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g2304 | ATGCCTTCAGTCTCTCTCTCTGCCACTGACACCACCCTCCAAGAAACCAAGAAGCAAAGCGCCAAGAAAGCCAAGAACCAATCCCCAACCATTGCAGAGAAGAAGAGTGCCTCCAAACTCCTTTCTGATCCCAACACCCCCGATCCCGACCAAGATGGGGTTTCGGGGAAGCTCCAGAAGAAGGCGAAGAAGCGTAAGGCTTCAGACATAGAGGCTATGGCGGCGACCAACGATGCCGACGAAGACACTAGTTCCGAGCTGGTGGAGCCCGAATCTTCTAGAGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAGGAACAACCTTTGGTGATGGAAGCAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATGCGGTCTCCAAATTCAGGATATCTGAACCGTTGAGGCTAAAATTGAAGGAGAAGGGGATCGAATCCTTGTTTCCTATTCAGGCCATGACTTTCGATTTAGTTCTCGACGGTTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTGGCATTTGTGCTACCCATATTGGAGTCTTTAATAAATGGTCCGACTAAATCTTCTAGAAAGACAGGCTACGGGAGAACTCCAAGTGTTCTTGTGCTTCTACCAACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGAGCGATGGGATTGAGTTCATGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATCAAGCTTAGGAGAGGTGTTGATATTGTAATTGGCACACCAGGTCGTGTTAAGGATCATATCGAGAGGGGAAATATAGACCTGAGCCAACTAAAATTCCGTGTCCTTGATGAAGCAGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAGTTGATTCTAGGTAAGGTTGAAAATGTTAATAAAGTTCAGACTCTTCTTTTCAGCGCTACTTTACCAGACTGGGTTAAACATATTGCTGCACAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGACATATTGTTCTCCCTTGTTCTGCTCCTGCCAGGTCCCAACTTATCCCGGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACCGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTACCTGGAGCTAGAGCTCTCCATGGTGACATACAACAAGCACAACGTGAGGTTACTCTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTTGATATAAATGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTAGAGTCCTATATCCATCGTTCTGGACGAACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTACCCTTTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCCGGTGTAAAATTTGAGCACATATCTGCCCCACGGCCTGATGATATTGCTAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTTTCCGATAGTGTGATTCCTGCGTTCAAAGAAACCGCAGAAGAGCTTTTGAAGAGTTCTGGTTTAACAGTTGTTGAATTGCTTGCAAAGGCTCTTGCAAAGGCTGTTGGCTATACCGAAATAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATGTTACTTTGCTTCTTGAGATTGGGAAACCAATCTTCACTCCTTCTTTTGCCTATGGAATCCTGAGGAGATTTTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCCCTCACTGCCGATGGAAATGGTGCTGTTTTTGATGTACCAGCTGAAGATTTAAATACATATCTTAGTGGTCAGGAAAATGCTGCTAATGTAAGTTTAGAGGTATTGAAAGCTTTGCCACGTTTGCAACAGAGAGATCAATCAAGAGGTGGCAGATTTGGTGACGGTGGTGGTCGAGGTGGTGGGAACAGGTTTGGAAGAGGCGGGGGAGGCAGAAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGAAACTGGGGTGGAAAAAGATGGTGA | 2142 | 0.4491 | MPSVSLSATDTTLQETKKQSAKKAKNQSPTIAEKKSASKLLSDPNTPDPDQDGVSGKLQKKAKKRKASDIEAMAATNDADEDTSSELVEPESSREDDHKKKKKKKKAKSEEQPLVMEAEEKEEKKEDPNAVSKFRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKSSRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKETAEELLKSSGLTVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEDLNTYLSGQENAANVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGGNRFGRGGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW* | 714 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g2304 | 713 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 44 | 689 | - | - | |
Vra8g2304 | 713 | CDD | SF2_C_DEAD | 357 | 483 | - | - | |
Vra8g2304 | 713 | CDD | DEADc | 144 | 337 | - | - | |
Vra8g2304 | 713 | CDD | GUCT_RH7_like | 570 | 655 | - | - | |
Vra8g2304 | 713 | MobiDBLite | consensus disorder prediction | 54 | 71 | - | - | |
Vra8g2304 | 713 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Vra8g2304 | 713 | Gene3D | - | 581 | 652 | - | - | |
Vra8g2304 | 713 | Gene3D | - | 74 | 342 | IPR027417 | - | |
Vra8g2304 | 713 | Pfam | GUCT (NUC152) domain | 563 | 658 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Vra8g2304 | 713 | SMART | ultradead3 | 148 | 360 | IPR014001 | - | |
Vra8g2304 | 713 | MobiDBLite | consensus disorder prediction | 23 | 49 | - | - | |
Vra8g2304 | 713 | Gene3D | - | 359 | 580 | IPR027417 | - | |
Vra8g2304 | 713 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 371 | 513 | IPR001650 | - | |
Vra8g2304 | 713 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 160 | 342 | IPR014001 | - | |
Vra8g2304 | 713 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 | 44 | 689 | - | - | |
Vra8g2304 | 713 | MobiDBLite | consensus disorder prediction | 108 | 130 | - | - | |
Vra8g2304 | 713 | Pfam | Helicase conserved C-terminal domain | 376 | 474 | IPR001650 | - | |
Vra8g2304 | 713 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 286 | 294 | IPR000629 | - | |
Vra8g2304 | 713 | SUPERFAMILY | RNA-binding domain, RBD | 567 | 650 | IPR035979 | GO:0003676 | |
Vra8g2304 | 713 | MobiDBLite | consensus disorder prediction | 661 | 713 | - | - | |
Vra8g2304 | 713 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 208 | 486 | IPR027417 | - | |
Vra8g2304 | 713 | SMART | helicmild6 | 397 | 474 | IPR001650 | - | |
Vra8g2304 | 713 | MobiDBLite | consensus disorder prediction | 1 | 130 | - | - | |
Vra8g2304 | 713 | Pfam | DEAD/DEAH box helicase | 153 | 330 | IPR011545 | GO:0003676|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g2304 | Vra-Chr8 | 41294147 | 41298738 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g2304 | 166 | 510 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 30.000 | 7.90e-39 | 147 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g2304 | K16911 | - | gmx:100820207 | 1016.91 |