Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2300 ATGGGTCTCATTCTAACAATCTATCTCCTCTTGTGTATACTATCATCTGCAAACGCTGAATTTTCCAAGAAGACGTACATCATTCAAATGGATAAGTCAGCAAAGCCTCAGACCTTCTCCAATCACCTTGAATGGTATACCTCAAAAGTGAAATCAATTCTCTCCACGTCGGTAGAAGCTGAGATGGACAAGGAGGAGAGAATCATTTACACCTACCAAACTGCTTTTCATGGACTGGCTGCCAAGTTGAGCCAAGAAGAGGCTGAGAAGCTAGAGGCAGAAGAAGGGGTTGTGGCTATGTTCCCGGATACCAAGTACCAACTTCACACCACGAGAAGTCCAACTTTCCTTGGGCTTGAACCAACACAAAGCACTAACGTGTGGTCAGAAAAGTTGGCCAACCATGATGTCACAGTGGGAGTGCTCGACACTGGGATTTGGCCTGAGAGTGAGAGCTTCAATGACACAGGTATGAGATCAGTACCTTCTCACTGGAAAGGTGCCTGTGAGACCGGTAGAGGCTTCGAAAAATATCACTGCAACAAGAAGATCGTGGGAGCAAGAATGTTTTACCATGGGTATGAAGCAGCAACTGGTAAAATTGATGAGAAAACAGAATACATATCGCCAAGAGATCAAGATGGTCACGGAACTCACACTGCAGCTACGGTTGCTGGCTCCCCGGTGCATGATGCTAATCTTCTAGGCTATGCTCATGGCACAGCAAGAGGAATGGCACCAAGAGCAAGAATTGCTGCTTACAAAGTATGCTGGACTGGTGGATGCTTCAGCTCAGATATTCTTTCAGCTGTCGATACAGCTGTGGCTGATGGAGTCGATGTTCTATCCATCTCTTTGGGTGGTGGAGTCTCCTCTTACTACCGTGATAGTTTATCTGTAGCTGCTTTTGGAGCAATGGAGAAAGGTGTTTTGGTATCATGTTCTGCTGGAAATGCAGGACCTGACCCTGTTAGCCTCACAAATGTGTCACCTTGGATCACCACAGTTGGAGCCAGCACCATGGATAGAGATTTTCCAGCAGATGTTAGTCTTGGAAATGGAAGAAAGATAACCGGAACCTCGCTCTATAAAGGGAGAAGCGTGCTCTCAGTTAAGAAACAATACCCTTTAGTATACATGGGAAATACCAACTCAAGCATACCTGATCCAAGATCTTTGTGCTTGGAAGGTACTTTGGATCGTAGAATGGTTTCAGGCAAGATTGTTATCTGTGACAGAGGCATTAGTCCAAGAGTTCAGAAGGGTCAAGTGGTGAAAAATGCAGGCGGGGTGGGAATGATTCTCACCAACACTGCAGCTAATGGAGAGGAGCTTGTTGCAGACTGTCATCTCCTTCCAGCAGTTGCAATTGGCGAGAAAGAAGGCAAGGAGCTCAAACATTATGTGTTAACAAGTAAAAAAGCTACTGCAACTCTAGCTTTTCTGGCTACAAGGTTGGGTGTTAGACCATCTCCTGTAGTGGCAGCATTTTCATCAAGAGGGCCCAATTTTCTTACCCTTGAAATTTTGAAGCCTGATGTGGTGGCTCCTGGGGTGAACATTCTTGCTGCTTGGAGTGGAGCCATTGGTCCTTCAAGTTTGCCAACAGACCACAGGAGGGTGAAGTTCAATATACTCTCAGGAACTTCAATGTCATGCCCTCATGTGAGTGGCATTGCTGCTTTGCTCAAGGCTAGGCATCCAGAATGGAGTCCTGCTGCTATAAAATCTGCTTTGATGACCACAGCTTATGTCCATGACAATACCATCAAGCCTCTCAAAGATGCCTCGAGTGCTGATGCCTCAACTCCTTATGATCATGGTGCTGGACACATCAACCCCATAAGAGCTCTTGACCCAGGTTTGGTTTATGATATTCAGCCACAGGATTACTTTGAATTCCTGTGCACTCAGAAACTAACTCCATCAGAACTCGGAGTTTTTGCCAAGTATTCAAACAGAACTTGCAGTCACACTCTTGCAAATCCTGGGGACTTGAACTACCCAGCCATATCCGTCGTTTTTCCACAGACAAATTCCTCTTCAGTTTTGACCGTTCACAGAACTGCCACCAACGTTGGCCCTGCTGTCTCCAAGTACCATGTTGTGGTTTCACATTTCAAAGGCGCTTCTGTTAAAGTTGAGCCAAAAACCTTGAGTTTTACCAAAAAATACCAGAAACTATCTTACAAAGTTACATTCACAACACAATCTCGACAAACAGAACCTGAATTTGGAGGTCTGGTATGGAAGGATGGTGTGCACAAAGTAAGAAGTCCAATTGTCATAACATATTTGTCACCAATATGA 2310 0.4511 MGLILTIYLLLCILSSANAEFSKKTYIIQMDKSAKPQTFSNHLEWYTSKVKSILSTSVEAEMDKEERIIYTYQTAFHGLAAKLSQEEAEKLEAEEGVVAMFPDTKYQLHTTRSPTFLGLEPTQSTNVWSEKLANHDVTVGVLDTGIWPESESFNDTGMRSVPSHWKGACETGRGFEKYHCNKKIVGARMFYHGYEAATGKIDEKTEYISPRDQDGHGTHTAATVAGSPVHDANLLGYAHGTARGMAPRARIAAYKVCWTGGCFSSDILSAVDTAVADGVDVLSISLGGGVSSYYRDSLSVAAFGAMEKGVLVSCSAGNAGPDPVSLTNVSPWITTVGASTMDRDFPADVSLGNGRKITGTSLYKGRSVLSVKKQYPLVYMGNTNSSIPDPRSLCLEGTLDRRMVSGKIVICDRGISPRVQKGQVVKNAGGVGMILTNTAANGEELVADCHLLPAVAIGEKEGKELKHYVLTSKKATATLAFLATRLGVRPSPVVAAFSSRGPNFLTLEILKPDVVAPGVNILAAWSGAIGPSSLPTDHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTIKPLKDASSADASTPYDHGAGHINPIRALDPGLVYDIQPQDYFEFLCTQKLTPSELGVFAKYSNRTCSHTLANPGDLNYPAISVVFPQTNSSSVLTVHRTATNVGPAVSKYHVVVSHFKGASVKVEPKTLSFTKKYQKLSYKVTFTTQSRQTEPEFGGLVWKDGVHKVRSPIVITYLSPI* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2300 769 Pfam Subtilase family 136 589 IPR000209 GO:0006508|GO:0008236
Vra8g2300 769 Pfam Fibronectin type-III domain 665 763 IPR041469 -
Vra8g2300 769 Gene3D Peptidase S8/S53 domain 136 631 IPR036852 GO:0004252|GO:0006508
Vra8g2300 769 ProSiteProfiles Serine proteases, subtilase domain profile. 105 618 - -
Vra8g2300 769 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Vra8g2300 769 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Vra8g2300 769 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Vra8g2300 769 Pfam Peptidase inhibitor I9 25 109 IPR010259 -
Vra8g2300 769 Gene3D - 635 766 - -
Vra8g2300 769 SUPERFAMILY Subtilisin-like 108 622 IPR036852 GO:0004252|GO:0006508
Vra8g2300 769 Pfam PA domain 374 465 IPR003137 -
Vra8g2300 769 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 13 109 IPR037045 -
Vra8g2300 769 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Vra8g2300 769 CDD Peptidases_S8_3 106 584 IPR034197 -
Vra8g2300 769 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 16 763 IPR045051 -
Vra8g2300 769 Gene3D - 342 487 - -
Vra8g2300 769 CDD PA_subtilisin_like 348 479 - -
Vra8g2300 769 PANTHER XYLEM SERINE PROTEINASE 1 16 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2300 Vra-Chr8 41261934 41264740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2300 3 769 Subtilisin-like Serine Gene Family AT5G51750 71.745 0.0 1156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2300 - - gmx:102661592 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2300 8 41261934 41264740 Vra1g0923 1 10742385 10745351 ECH
Vra8g2300 8 41261934 41264740 Vra8g2300 8 41261934 41264740 ECH
Vra1g0923 1 10742385 10745351 Vra8g2300 8 41261934 41264740 PCT