Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2299 ATGCCATCTCGACAACTCTCCACGTCGCCACCACCTTCTAACCGCCGCATCTTAACCTCTCCCGTAACTTCCACCGCCTCCCTTTGCTCTTTATTCTTTTTACTTTGCCTCTGCTTCCGCAAGCGTAAACGCACCACCCCTTCCTCCGACTCCGACTCCACTCCCCCTCACCCCTTTCCCTACGCCCTCCTCCGCCGCGCCACCAACTCCTTCTCCACCCGCCTCGGCCACGGTGGCTTCGGTCCTGTCTTCGCCGGCACCCTTGCCGGCGACCCCGTTGCCGTCAAGCTCATGGACTCTGTCTCCCAGCAGGGAGAGCGCGAGTTCCACAACGAGCTCTTCTTCGCGTCCAGGCTTCGGTCCCCCACTCTCGTCCCTGCCATCGGCTTCTCCTCCGACCCCAAACGTCGGCGTTTCCTCCTCGTCTACCACCTCATGCACAACGGCAACCTCCACGACGCCCTCTTGCGCTCCAAAACCCCTCACCTAAAGAGCTGGAAAAATCGCTTCTCCATTGTCCTCGACATCGCCAGAGGCATCCACTACCTCCACTCGCTCGACCCGCCGGTCATCCACGGTGACATCAAACCCTCCAACATTCTCCTAGACAACACCTTCTCTGCAAAACTTGCCGACTTCGGTCTTGCGCGCTTAAAACCCCATGTCCAAGTCCAAGAGTTCAAAGCAAAGCGCGACGAGAAGAGAAGGGACGAGTCCGAGAGCGATGCTGGGTCGGAGTTAGAAACTCTGAGCGTCAAGACAGAGCAATCGTTTGAAGGTAACACCGGGTCGGATTATGTGATGGATTGGATTGGGAAGGAGTTGAAGAAGGAAAGGCCGATGACGGTGGAGAAGATTTCTTCTGGGTCGAGCAGTGGACTGGCGGAGAAGAAGAAAAGTAGGAAGAAATTGGAGTGGTGGGAGAAGATGAATGATAGTGGAGTTCCGAAGATGGAGAAGAGAAGGGCCGCGAGGGAATGGTGGAAGGAAGAGTATTCGGAAGAGCTTGCGAGGAAGACGAAGAAAAAGAAAAAGAAGGAGAAGAAAAAGAGAAAGGGTGTTAGCGGTGATGGTGATTTGGAGATAGATAATGGTGATGTAAATGTGTACAAGAGGGAGAAGAACCGGAGCAGAAACAGTGGTGGAAGTGTAGATTCTTGGTTGAGTGGTGATGTACGTGGAGTTGGATGGAACAGCTACGATTCGGGGACTTGTAGCGGTGAAATAGTGGCCAAGAGTGGTGGTGGTGTGAGTAGTACTCCGAGTATGAGGGGAACGGTTTTCTATGTGGCTCCTGAGTATGGATACAATGGAGATGTTTCTGAGAAGTGCGACGTGTATAGTTTCGGGGTTTTGTTGCTTGTTATTGTTTCTGGGAGGAGGCCACTTCAGGTGACAGGGTCGCCCATATCGGAGCTTCAACGTGCGAATCTGGTGTCGTGGGCGAGGATATGTGGTCGGAGGGGAAAGCTTCTAGAAGTGGTGGATGAGGGTGTTGAGGGGTTGGACAAAGAGCAGGCTAGTCTGTGCGTGACGGTTGCGCTGGCTTGTTTGCTAAAGTCACCCAGCCGTCGACCTTCCATGAAGGAGGTTCTGGAGATGCTAAGTGGGGAGCTGGAGCCTCCGCAGCCCCTCAACTCCAGGAAGCAGGGTCGGTGA 1659 0.5431 MPSRQLSTSPPPSNRRILTSPVTSTASLCSLFFLLCLCFRKRKRTTPSSDSDSTPPHPFPYALLRRATNSFSTRLGHGGFGPVFAGTLAGDPVAVKLMDSVSQQGEREFHNELFFASRLRSPTLVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRSKTPHLKSWKNRFSIVLDIARGIHYLHSLDPPVIHGDIKPSNILLDNTFSAKLADFGLARLKPHVQVQEFKAKRDEKRRDESESDAGSELETLSVKTEQSFEGNTGSDYVMDWIGKELKKERPMTVEKISSGSSSGLAEKKKSRKKLEWWEKMNDSGVPKMEKRRAAREWWKEEYSEELARKTKKKKKKEKKKRKGVSGDGDLEIDNGDVNVYKREKNRSRNSGGSVDSWLSGDVRGVGWNSYDSGTCSGEIVAKSGGGVSSTPSMRGTVFYVAPEYGYNGDVSEKCDVYSFGVLLLVIVSGRRPLQVTGSPISELQRANLVSWARICGRRGKLLEVVDEGVEGLDKEQASLCVTVALACLLKSPSRRPSMKEVLEMLSGELEPPQPLNSRKQGR* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2299 552 Gene3D Transferase(Phosphotransferase) domain 1 60 244 - -
Vra8g2299 552 MobiDBLite consensus disorder prediction 338 358 - -
Vra8g2299 552 Coils Coil 329 349 - -
Vra8g2299 552 Pfam Protein tyrosine and serine/threonine kinase 71 221 IPR001245 GO:0004672|GO:0006468
Vra8g2299 552 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 543 - -
Vra8g2299 552 ProSiteProfiles Protein kinase domain profile. 69 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2299 552 SMART serkin_6 69 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2299 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vra8g2299 552 Gene3D Transferase(Phosphotransferase) domain 1 404 544 - -
Vra8g2299 552 Pfam Protein kinase domain 418 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2299 552 MobiDBLite consensus disorder prediction 229 243 - -
Vra8g2299 552 MobiDBLite consensus disorder prediction 245 259 - -
Vra8g2299 552 PANTHER OS07G0586332 PROTEIN 1 543 IPR044576 -
Vra8g2299 552 SUPERFAMILY Protein kinase-like (PK-like) 56 543 IPR011009 -
Vra8g2299 552 MobiDBLite consensus disorder prediction 229 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2299 Vra-Chr8 41249884 41252349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2299 412 535 Receptor kinase-like Gene Family AT3G58690 34.615 2.06e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vra8g2299 PK_Tyr_Ser-Thr 3.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2299 - - var:108325385 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2299 8 41249884 41252349 Vra8g2299 8 41249884 41252349 ECH
Vra1g0925 1 10767223 10770229 Vra8g2299 8 41249884 41252349 PCT