Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2298 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAATTTTCTAATGCCCTCCAACCGCAACACAAAATCTCTAAAGATCTCATCCTGGATCATCACAACACCGATAATTCTCCCCTTGTCGCTTATTCAGATAAAGAAGTGCGTACTAGCCGCCCCAACCAACTCTTTTATGCGCCTGAAACCAGTCACGCTAATTCTGCAGAAGAAGAATACGCAAAGAAGATGGTTCACAGAGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCAACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCCCTTCATCAGGGGAAAGAGGTCGATGTCTGATCAAATGAACGAGGCGGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAATTGAGTGAGAAGAGGGATAAGCTGAAGAAGAAAGTTGCCATAAATTCCAGCCTCGAAAGCCGTGAGAACAAGCATGAATCATGTGGTTTCACTGTCCGCCAAAATAGTAGTGGAGCTGTGGGAATTGAAATCAGTGGATTGAGTGAGGAAGGGGTTTCACTTTCTAAACTGTTGGAACTGTTGTTAGAAGAGGGACTTGAAGTTTTTTGTTGTCTTTCAACTAAAGTCGATGGCAGACTACTCCACAGTTTGCAGTGTGAGGTTGTCAATTCCGACACTGTAGATCTATCTGAGCTAAGAAGAAAATTCTCCAATGTAGTTCCATCATTTAGAGTTTCTGAATAA 738 0.4295 MFPLQRGNELVIQFSNALQPQHKISKDLILDHHNTDNSPLVAYSDKEVRTSRPNQLFYAPETSHANSAEEEYAKKMVHREIERQRRQEMATLHASLRSLLPLPFIRGKRSMSDQMNEAVNYINHLQKNIKELSEKRDKLKKKVAINSSLESRENKHESCGFTVRQNSSGAVGIEISGLSEEGVSLSKLLELLLEEGLEVFCCLSTKVDGRLLHSLQCEVVNSDTVDLSELRRKFSNVVPSFRVSE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2298 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 243 IPR015660 GO:0003700|GO:0006357
Vra8g2298 245 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Vra8g2298 245 Coils Coil 115 142 - -
Vra8g2298 245 CDD bHLH_AtORG2_like 74 150 - -
Vra8g2298 245 Gene3D - 64 158 IPR036638 GO:0046983
Vra8g2298 245 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 243 - -
Vra8g2298 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Vra8g2298 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 145 IPR036638 GO:0046983
Vra8g2298 245 SMART finulus 79 131 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2298 Vra-Chr8 41243669 41244750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2298 74 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.243 3.34e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g2298 HLH 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2298 - - pvu:PHAVU_007G064300g 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2298 8 41243669 41244750 Vra8g2298 8 41243669 41244750 ECH
Vra1g0926 1 10773435 10775398 Vra8g2298 8 41243669 41244750 PCT