Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2297 ATGAATCCTTTACACCCTACTGATGAGTTGTACTTTCAGATTACAACTGATAATTACTATTCCCAACCAATCCAAACAACCCCTCCAGAAAATCAGATCTTCTATGATCCTGTGCTCGATGGTAGTGCTCCCATTCCCTGTACAGCTCAAATGGGCACTACCAAGGGCGAGCAGAGAGGAAAGTTACCAGCTTGGACAAAGGAAGATTATAAGACCACCACCATGGATGAAAACAAGAGGTGGATGCATAGAGAGACTGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACCGACTTTAGATCTCTTCTGCCTCTTCAATATATCAAGGGAAAACGCTCAATTTCTGATCACATGCATGAGGGTGCAAATTACATCAAACACCTTGAAAATAAAGTGAAAGAGTTGCAAGCTAAGAGAGACGAGTTTAAGAAGTCGTCCAATTTGAGTCCTGTTGTTGTTTCTGATAGTGGAAGCTTTAGCACTACAGATCTTCCAATATGTGTCATTGTTCATCCTTTTCCGGGAGGTATTCAGATTAAGTGTAGTTACAGCTTCAGAAAATATGTCTTTCCTTTGTCAAGAGTGATAGATATGGTGCTTAAAGAAGGGCTTGATGTTGTCAACTGTACCTCCACCAAAACAGATGACAGCTTCATACACACTATCCGAATAGAGGTTCCACATACGATGACTGGGACTAATTACACTGAACTGCAAAAGAAGCTTGTCGAAGCGATATCATCTTCATGTTCGGAGGAGATACTATCTGAATCTGAAAACTGCTGA 792 0.4104 MNPLHPTDELYFQITTDNYYSQPIQTTPPENQIFYDPVLDGSAPIPCTAQMGTTKGEQRGKLPAWTKEDYKTTTMDENKRWMHRETEKQRRQEMTRLCTDFRSLLPLQYIKGKRSISDHMHEGANYIKHLENKVKELQAKRDEFKKSSNLSPVVVSDSGSFSTTDLPICVIVHPFPGGIQIKCSYSFRKYVFPLSRVIDMVLKEGLDVVNCTSTKTDDSFIHTIRIEVPHTMTGTNYTELQKKLVEAISSSCSEEILSESENC* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2297 263 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 54 255 IPR015660 GO:0003700|GO:0006357
Vra8g2297 263 Gene3D - 69 152 IPR036638 GO:0046983
Vra8g2297 263 PANTHER TRANSCRIPTION FACTOR 54 255 - -
Vra8g2297 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Vra8g2297 263 CDD bHLH_AtORG2_like 79 151 - -
Vra8g2297 263 Coils Coil 120 147 - -
Vra8g2297 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 158 IPR036638 GO:0046983
Vra8g2297 263 Pfam Helix-loop-helix DNA-binding domain 79 131 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2297 Vra-Chr8 41229898 41231647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2297 83 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 38.150 1.80e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g2297 HLH 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2297 - - gmx:100803786 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2297 8 41229898 41231647 Vra8g2297 8 41229898 41231647 ECH
Vra1g0927 1 10789652 10791783 Vra8g2297 8 41229898 41231647 PCT