Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2296 ATGAATGGAACTTTGCAGATCGCAGTGAAGCGGTTGAAGATGATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTACTAGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGCGTGGATTCTATGCAGGAGGTGAAGAAAGGTTAATTGTATATGATTACATGCCTAATCACAGTTTGCTCAATCATTTGCATGGTCAACTTGCCAAAGATTGTTTGTTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGCTTGGTGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAAGCAAGCAATGTTCTTTTAGATTCTGAATTTGAAGCGAAGGTTGCTGATTTTGGGTTTGCTAAGCTGATACCAGAGGGTGTAAGCCATCTGACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCTCCAGAATATGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTGAGTGGGAAGAAGCCAATTGAGAAACTTCAAGGCGGAGTGAAAAGGGATATAGTTCAGTGGGTTACACCTCATCTTCAAAAGGCTAACTTCACTCATATTGTTGATTCAAAATTAAAGGGACGATTTGATTTAGAGCAGTTGAAATCTGTAATCATGATAGCTATAAGGTGCACAGAAAGTAATCCAGAAAAAAGGCCTAGCATGGTAGAGGTCGTGGACTGGCTCAAGGGTGCCATTGGAAGGAGAAAAAAAGATATTCCAAATTTAGAATATGATAAATATGAAGAAAACTATGGAGAGATTAGAATAACACACTCCAACTTGAAAATACCAAGTGATGATCATAAACTTAGAATAAGATAA 897 0.3991 MNGTLQIAVKRLKMMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGEERLIVYDYMPNHSLLNHLHGQLAKDCLLDWPRRMSIAIGAAEGLVYLHHEANPHIIHRDIKASNVLLDSEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSGKKPIEKLQGGVKRDIVQWVTPHLQKANFTHIVDSKLKGRFDLEQLKSVIMIAIRCTESNPEKRPSMVEVVDWLKGAIGRRKKDIPNLEYDKYEENYGEIRITHSNLKIPSDDHKLRIR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2296 298 Gene3D Phosphorylase Kinase; domain 1 1 58 - -
Vra8g2296 298 Pfam Protein tyrosine and serine/threonine kinase 4 251 IPR001245 GO:0004672|GO:0006468
Vra8g2296 298 PANTHER OS01G0253100 PROTEIN 5 278 IPR045271 GO:0004714|GO:0006468
Vra8g2296 298 PIRSF ILK 2 263 - -
Vra8g2296 298 SUPERFAMILY Protein kinase-like (PK-like) 5 259 IPR011009 -
Vra8g2296 298 ProSiteProfiles Protein kinase domain profile. 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2296 298 CDD STKc_IRAK 1 255 - -
Vra8g2296 298 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 278 - -
Vra8g2296 298 SMART serkin_6 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2296 298 Gene3D Transferase(Phosphotransferase) domain 1 59 265 - -
Vra8g2296 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2296 Vra-Chr8 41220061 41221721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2296 2 257 Receptor kinase-like Gene Family AT5G45780 47.860 1.09e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vra8g2296 PK_Tyr_Ser-Thr 3.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2296 - - gmx:100817283 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2296 8 41220061 41221721 Vra8g2296 8 41220061 41221721 ECH
Vra1g0928 1 10801489 10802946 Vra8g2296 8 41220061 41221721 PCT