Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2290 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTCACGTTTTCAAAGCGAAGAAACGGTTTGCTGAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCTGAAATCGCTCTGATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCGACATGTCTCAGACTGGTGACGACGCTGAACATCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAGTATGAATCACTCCAACGAACCCAAAGGAATCTTCAGGGAGAAGAACTTGAGCCACTCAGCATGAAAGAACTGCATAGCTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTATCAAGAATTGACGAACTACACGGAAAGGTGTGCAACCTGGAGCAGATTAACAGACATTTGGAGTCAAAGAACATAAGTAAATGCACTCATTGTGAAGATTATACTAATCAGTTTGAAGCTGGAACAGCAACTTCGTTGCGGCCTCAGCAGGAGCAAATTACTTCAAAGGGAAAAGAAATAGACACGAGGTGTCTTAACGAGAATAACGAATGGCAGCTTTGA 666 0.4369 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFDMSQTGDDAEHQSEQCLYQELLVLRVKYESLQRTQRNLQGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVCNLEQINRHLESKNISKCTHCEDYTNQFEAGTATSLRPQQEQITSKGKEIDTRCLNENNEWQL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2290 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra8g2290 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra8g2290 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra8g2290 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra8g2290 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra8g2290 221 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vra8g2290 221 PANTHER MADS BOX PROTEIN 1 210 - -
Vra8g2290 221 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra8g2290 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 210 - -
Vra8g2290 221 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Vra8g2290 221 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vra8g2290 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra8g2290 221 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra8g2290 221 Coils Coil 125 145 - -
Vra8g2290 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2290 Vra-Chr8 41163212 41169826 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2290 1 168 MADS-box Gene Family AT1G24260 52.047 2.01e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra8g2290 K-box 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2290 K09264 - gmx:100802197 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2290 8 41163212 41169826 Vra8g2290 8 41163212 41169826 ECH
Vra8g2290 8 41163212 41169826 Vra1g0932 1 10915639 10921537 PCT