Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2286 ATGGTGAGGGGAAAGGTTCAAATGAAGAAAATTGAGGATGCAACAAGCCGTCAAGTGACCTTTTCAAAGCGTCGAAATGGTCTTCTAAAGAAAGCTTATGAGCTATCTGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCTCCCAGAATGGAAGACTTTATGAGTTCTCAAGTTCCAACATGTCAAAGATTTTGGAACGATACCGTGAATATACCAAGGATGTTCCTACCAATAAGTTTGGAGATGATTATATCCAGCAACTGAAGTTAGAATCCGCAAACATGGCAGAGAAGATTCAGCTTCTTGAAATATCTAAAAGGAAGCTGCTGGGACAAAGTGTGAGTTGTTGTTCCTATGATGAACTCAAAGAAATCGAGGATCAGCTGCAGAGAAGTTTGCTAAGAGTCAGACAAAGAAAGGCTCAACTATACATGGAGCAGATTGATCAACTACGATGCCAGGAGAGTAACTTGCTCCAAGAGAATGCCAAATTAACTGAAATGTGGCAGAGGGTGGAAAACTCACAAGTTGAAGCAGAAGAAGAAGAAGCAGCACCTTACTGTTCGAGTAGACAGAGTTTAGAAGTGGATACAGAATTATTTATTGGACTGCCAAAGCAAGGTTGCTCATTGTAG 639 0.4069 MVRGKVQMKKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSSSNMSKILERYREYTKDVPTNKFGDDYIQQLKLESANMAEKIQLLEISKRKLLGQSVSCCSYDELKEIEDQLQRSLLRVRQRKAQLYMEQIDQLRCQESNLLQENAKLTEMWQRVENSQVEAEEEEAAPYCSSRQSLEVDTELFIGLPKQGCSL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2286 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra8g2286 212 PANTHER MADS BOX PROTEIN 1 207 - -
Vra8g2286 212 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra8g2286 212 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Vra8g2286 212 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Vra8g2286 212 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra8g2286 212 PANTHER MADS-BOX PROTEIN SOC1 1 207 - -
Vra8g2286 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra8g2286 212 Coils Coil 86 106 - -
Vra8g2286 212 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vra8g2286 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra8g2286 212 Coils Coil 120 169 - -
Vra8g2286 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra8g2286 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra8g2286 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra8g2286 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2286 Vra-Chr8 41119772 41129144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2286 1 206 MADS-box Gene Family AT4G22950 49.275 1.39e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra8g2286 K-box 8.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2286 - - gmx:100800580 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2286 8 41119772 41129144 Vra8g2286 8 41119772 41129144 ECH