Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2283 ATGGAGTCAAATCCCACCCATGACGGGGATGATACCTCGGAGAAGCTGTCACCGCCAATGGTGGACCGGCCGGAGTCGTCGTCACCCTCTCCGTCTTCCCCGCAGGCGCTACAAATGAAAGAAGAGGCCATGGACGCGGAGCAAGGCGTTGACATGTCCCTTCCCGTGAACGTTATTCCGATGCCTCCGACGGTGGCGAAGAGGCCCTCGAAGGACCGACACACGAAGGTGGAGGGGCGTGGCCGCAGAATCCGGATGCCGGCTACATGCGCCGCCAGGATCTTCCAGCTGACGCGCGAGCTGGGGCACAAGTCGGACGGAGAAACAATCCGATGGCTTCTGGAGCACGCTGAGCCCGCTATAATCGAGGCCACCGGAACCGGCACCGTTCCGGCGATCGCGGTGTCTGTCGGCGGTACACTGAAGATTCCGACATCCTCGGCGGCGAGGCCCCACGGGGAAGACAACCCGAAGAAACGAAGGAGGAGAGCGTCGAACAGCGAATTCATCGACGTGAACGAAAACCACGTTTCGGTGTCTTCAGGACTCGCACCAATCGCTCAAACCGCATATGGCGGTGTTGCCAGTGGCGGTGGTGGTGGAGTAGTTCCACTTTGGAACGGTAACGGTTCAGGGCCTTTCTTCATGTTCCCAAACGCTTCAAACCCGCCTCAGTATTGGGCCATTCCCGCAACGGCGGCCCCATTTTTTAACGTGCAGGCCCGGCCCATTTCGGGATTTGTTTCTGCCTTACAGATGCACGAACAGGATAAGCCCTCCTCAAATGGCTGTGCCTCGGATTCTGTGAACTCTTCGTCCACTATGGGTTCTAGTATGAGCTCAGTGAGTGTTACTACCAGCGCCGCCGCTTCCTCCTCATCCGCCGCCACAACCACTCAAATACTCAGGGATTTCTCTTTGGAAATTTATGACAAGAAAGAGCTTCAATTTTTGGGTCAAGCGCCACCTTCTTCAAAGCCTTGA 984 0.5711 MESNPTHDGDDTSEKLSPPMVDRPESSSPSPSSPQALQMKEEAMDAEQGVDMSLPVNVIPMPPTVAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVSVGGTLKIPTSSAARPHGEDNPKKRRRRASNSEFIDVNENHVSVSSGLAPIAQTAYGGVASGGGGGVVPLWNGNGSGPFFMFPNASNPPQYWAIPATAAPFFNVQARPISGFVSALQMHEQDKPSSNGCASDSVNSSSTMGSSMSSVSVTTSAAASSSSAATTTQILRDFSLEIYDKKELQFLGQAPPSSKP* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2283 327 MobiDBLite consensus disorder prediction 254 277 - -
Vra8g2283 327 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 322 IPR005333 GO:0003700
Vra8g2283 327 MobiDBLite consensus disorder prediction 143 167 - -
Vra8g2283 327 MobiDBLite consensus disorder prediction 1 47 - -
Vra8g2283 327 MobiDBLite consensus disorder prediction 152 167 - -
Vra8g2283 327 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 25 322 - -
Vra8g2283 327 MobiDBLite consensus disorder prediction 253 277 - -
Vra8g2283 327 MobiDBLite consensus disorder prediction 60 80 - -
Vra8g2283 327 MobiDBLite consensus disorder prediction 1 18 - -
Vra8g2283 327 ProSiteProfiles TCP domain profile. 70 124 IPR017887 -
Vra8g2283 327 Pfam TCP family transcription factor 70 152 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2283 Vra-Chr8 41103751 41105321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2283 1 318 TCP Transcription Factor Family AT5G51910 50.456 1.70e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra8g2283 TCP 9.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2283 - - gmx:100819475 462.996