Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2277 ATGTTTTCCACCGACCCACAAGCGACCTCGCCGGACTCGGGAGGTTCCCGTCCGGCGCTGTCGGATGAGGAGGTGTTTCTGGCGGCGAGCCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCAGGGAGACACGCCACCCGGTGTTTCGCGGCGTCAGGCGGAGGGACTCCGGCAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGACTAGGATTTGGCTGGGGACCTTTCCTACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCTGCGCTGGCGCTTAGGGGAAGGTCGGCCTGTCTAAATTTCGCCGACTCCGCGAATAGGTTGCCGGTGCCGGCGACGGCTGATCCCCGGGACATTCAGAAGGCGGCGGCTGAGGCTGCAGAGGCGTTTCGGCCCGGTAACGAATCGGGAAAGGATGATGATGCGGTGGTGGAGACCGTGGCGACAGCGACGGAGAATGTTGAAGAAAAAGAGATGGAGGATCTGAGGAACATGGTGCTGATGTCGCCAACCCATTGCTTCGAGAGTGGTGAATATGGAAGTAGGGATATGGAATTTGAAGACATTGAAGTTTCGTTGTGGAGTTATTCACTCTAA 606 0.5957 MFSTDPQATSPDSGGSRPALSDEEVFLAASHPKKRAGRKKFRETRHPVFRGVRRRDSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSANRLPVPATADPRDIQKAAAEAAEAFRPGNESGKDDDAVVETVATATENVEEKEMEDLRNMVLMSPTHCFESGEYGSRDMEFEDIEVSLWSYSL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2277 201 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Vra8g2277 201 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vra8g2277 201 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Vra8g2277 201 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 200 - -
Vra8g2277 201 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Vra8g2277 201 MobiDBLite consensus disorder prediction 1 16 - -
Vra8g2277 201 MobiDBLite consensus disorder prediction 1 43 - -
Vra8g2277 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 200 IPR045277 GO:0003700
Vra8g2277 201 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Vra8g2277 201 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Vra8g2277 201 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Vra8g2277 201 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2277 Vra-Chr8 41052167 41053589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2277 27 134 AP2-EREBP Transcription Factor Family AT5G51990 82.407 1.79e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g2277 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2277 - K09286 gmx:100101894 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2277 8 41052167 41053589 Vra11g0314 11 2243359 2244245 ECH
Vra8g2277 8 41052167 41053589 Vra8g2277 8 41052167 41053589 ECH
Vra1g0948 1 11150318 11151406 Vra8g2277 8 41052167 41053589 PCT