Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2276 ATGGATGGCAACCCTTTTGGAAACGTGCCACCACCTCCAATACAAGTTCCTGATAACTTCCCTCATTCATCCTCCTCTTCGCCAACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCGCCGGCTTCCGCTACAGGGGGACGCGCTCCCGTAGCGGTAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACCACGCGCATTTGGCTGGGGACTTACCCGGCACCGGACATGGCTGCCGCAGCCTATGATGTCGCGGCTCTCGCGTTGAAAGGACCCGACACGCCCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCCGCCACCGATATTCGCGCCGCGGCTGCGGCAGCAGCGCAGGCTAGGCTCGTGAGGGCGCCGCAGGAGAGTGGGCAGGCGGTAAACCCTGATATTGGACAGGAGTCGGAGAAGCCCGAGGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTGTGAGACCGTACGGATCAACCTACGCTAGTTGTTCCAGATTACAGGTAATGTTATAA 585 0.5726 MDGNPFGNVPPPPIQVPDNFPHSSSSSPTPTTSSPSPTPSAGFRYRGTRSRSGKWVSEIREPRKTTRIWLGTYPAPDMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSATDIRAAAAAAAQARLVRAPQESGQAVNPDIGQESEKPEEYYDEDELLNMPNLLDDMARGMQVVRPYGSTYASCSRLQVML* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2276 194 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Vra8g2276 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE 7 180 - -
Vra8g2276 194 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Vra8g2276 194 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Vra8g2276 194 MobiDBLite consensus disorder prediction 1 58 - -
Vra8g2276 194 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Vra8g2276 194 MobiDBLite consensus disorder prediction 19 45 - -
Vra8g2276 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 180 - -
Vra8g2276 194 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Vra8g2276 194 Pfam AP2 domain 49 92 IPR001471 GO:0003700|GO:0006355
Vra8g2276 194 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vra8g2276 194 PRINTS Ethylene responsive element binding protein signature 82 102 IPR001471 GO:0003700|GO:0006355
Vra8g2276 194 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2276 Vra-Chr8 41040120 41042062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2276 45 174 AP2-EREBP Transcription Factor Family AT5G52020 58.042 9.92e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g2276 AP2 5.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2276 - - var:108325547 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2276 8 41040120 41042062 Vra8g2276 8 41040120 41042062 ECH