Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2274 ATGAAGCCTATTTTCTGTGGAAACTTTGAATATGATGCCCGGCAGTCAGAGTTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGACAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAAAGAGATGCTGAGGCCGCTATTCGTGCTCTTGATCGAATAGAATTTGGTCGCCGAAGACTCCGTGTTGAATGGACAAGGCATGAACGTGGTGTTAGAAGGCCATCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATAAATTTTGATACATACCATACCAGAACAAGGGACTTAGAGAGGCACTTTGAACCGTATGGTAAGATACTCAGTGTTAGGATCAGAAGGAACTTTGCTTTTGTTCAGTATGAATCGGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGTAAGTTACTGGATCGAGTTATTTCAGTTGAATTTGCTGTAAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAGCGTGATAGAAGCCGTGATGGAAGACGATCCCTTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTACGGTCGTGGGCCCAGTCCGTATCAGAGAGAGAGGGGAAGTCCTGACTATGGCCGAGACCGAAGCCGTAGCAGAAGCCCCCCTAGAAGGGAGCCAGCCAGCCCTGCATATGGACGTAGAAGCCCCAGTCCATATAGAAGAGAAAGGGAGGGTTCTGATCCTGTTAGGGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGCATTTCTCCTTCTCATAGTCCTGAAGAAAGAGGGAGGACAAGTCCTCAAAATGGTCGTGGTTCTAGCCATAGTCCTCGTGATACTGAGAAGATTAGCCCTGAAAATGGGCATGGCTCTGGAAGTCCCGATGAAAAAGGGAATGCCAGCCCTTACAATGGTTACGGAAGGAGCCCAAATACCGTGCCTGATGCCAGGGACAGTCCTAACTACGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAGTCTCCCCCTGCGGACGAATGA 1104 0.4764 MKPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRIEFGRRRLRVEWTRHERGVRRPSSSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKILSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSLSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRREPASPAYGRRSPSPYRREREGSDPVRDSSRSPYHKERGRTDHGISPSHSPEERGRTSPQNGRGSSHSPRDTEKISPENGHGSGSPDEKGNASPYNGYGRSPNTVPDARDSPNYGGPESPMHERYRSQSPPADE* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2274 367 PANTHER - 4 207 - -
Vra8g2274 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 164 IPR000504 GO:0003723
Vra8g2274 367 SUPERFAMILY RNA-binding domain, RBD 77 170 IPR035979 GO:0003676
Vra8g2274 367 SMART rrm1_1 3 68 IPR000504 GO:0003723
Vra8g2274 367 SMART rrm1_1 94 160 IPR000504 GO:0003723
Vra8g2274 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 72 IPR000504 GO:0003723
Vra8g2274 367 MobiDBLite consensus disorder prediction 284 299 - -
Vra8g2274 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 66 IPR000504 GO:0003723
Vra8g2274 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 157 IPR000504 GO:0003723
Vra8g2274 367 Gene3D - 84 175 IPR012677 -
Vra8g2274 367 Gene3D - 1 83 IPR012677 -
Vra8g2274 367 MobiDBLite consensus disorder prediction 217 232 - -
Vra8g2274 367 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 207 - -
Vra8g2274 367 MobiDBLite consensus disorder prediction 166 204 - -
Vra8g2274 367 SUPERFAMILY RNA-binding domain, RBD 4 88 IPR035979 GO:0003676
Vra8g2274 367 MobiDBLite consensus disorder prediction 246 283 - -
Vra8g2274 367 MobiDBLite consensus disorder prediction 166 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2274 Vra-Chr8 41011541 41015434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2274 4 159 Eukaryotic Initiation Factors Gene Family AT4G34110 24.561 3.61e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2274 K12893 - gmx:100796509 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2274 8 41011541 41015434 Vra8g2274 8 41011541 41015434 ECH