Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2268 ATGGACGGGAATCGAAATGGGTTTGGTATTTTGCATGAAGCTGGTGTTGATGTTGGACCTCAGATGTCCAATAACTTGGACTTGAATGTGGAGCAGAACTGTTGTAGTCCAATCATTGCTCATGCTATTGACAATCAATCTTGTCCTCCATCAAAAAGTGTACACAGCACAAATACTGTTTTGGGAATTGGTGCAGAATTCGAGTCTGATGATCATGCATACCGATTCTATAATAAGTATGCCACTTTGGTGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTGCATGGTCAGGTGGTGTCTAGGAAGTTTACCTGCTCCAAAGAAGGGTACCGCAGGAAAGACAAAAGAGATGTCAATGTAAAGAAGCATAGGAAGGAAACGAGAACTGGCTGCTTGGCGCATATGATCGTCACTCGGCAGCCAAATGGAAAATACCAGGTCACCCATTTTGAAGCAGAACATAATCATGACAATGTAAACCCTAACAATGCTAACGTGGTAAACTTGCTAAATGAATTTAGTGTTGCTCGAGCTGGGGAAGCTGAATCAAACAATAGTTTGGGACCAAAATCAGAGTCAGCATTAGATATGTTGAATAAAAAAATAACTGCACACGAATCTCTTGATATACTTTCAATGAATTATGACAGCTATCTTCATTGTGCAAGGGAAAGAGATATGAGGGAAGGAGAAGCAGGGCGTTTGCTTTGTTACTTCCAAAGGCAGCACTTCGAAAATCCAGCCTTTTTTTATGCCATACAGCTTGATGTTGATGACAAGGTTAGCAATATTTTTTGGTCTGACGACAGCATGGTCGTGGATTTTGATCACTTTGGAGATGTCATTTGTTTGGATACAATTTGCAGAACGAATGAAGATCTTCGGCCACTTGTACAGTTTTTAGGTGTTAACCATCACAGACAAGTTTTAATATTTGCTGCTGCTTTTTTGTATGATGGTTCCATTGAATCATTTACTTGGTTATTTCGAACTTTCATTAATGCTATGTCCGGGAAAAAGCCAAAGGCCATTCTCACAGAACAAGAAGCTGTAATCATTGAAGCAGTCAATACAGTTTTACCTGACACAAATCATTGTACATGTGTATGGCAGTTGTATGAGAACACTTTGAAACACCTCAGTCATGTTGTAAAGGATGCAGAATCTCTTGCAAATGATCTGCGGAGCACTATTTATGACCCCAAGGATGAGGAAGAATTTACTCATTCTTGGGAAACTGTGCTAGAGAAGTATAATCTGCAGCAAAATGAATGGCTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCTGTTGTCTTTGGTCGGAATACATTTTTTGTAGACATCAAAGGCTTTCATTTAGCTGAGATTTTGTCTCATAAGTTTAGAAGTTATCTAAATCCTGAAACTGATGTCGTTCAATTTTTTAAGCATTTTGAAAGGGTAGTAGGTGAACAGCGTTATAAAGAAATAGAAGCTAGTGATGAAATGAGCAGGTGTTTGCCAAGACTAATGGGTAATGTGGTTCTGTTGAAGCATGCAAGTAATATTTATACACCAAGAGCATTTGAAGTATTTCAGCGAGCATATGAGAAGTCTTTGAATGTTATTGTTAATCAACACAGTAGAAATGGATCATTGTTTCAGTACAAAGCAAATACATTTGGGCATAACAGACAATACACTGTCACCTTCAATTCCTCTGATGGCACAGTTGTCTGCAGTTGTATGAAGTTTGACCGTGTTGGATTTCTGTGTGATCATGCGCTTAAAGTTCTTGATCAAAGAAACATAAAAGTAGTTCCACCTCAGTACATCTTGGAGAGATGGACTGAAGATGCGAGGATGGGAAATCTTAGAGAGATTAGGCAATGTAAAATGCAAGATAATCCTAAAAGGGTTGTTGCTAGCTGTTACAAAGACTTGTGCCACAAATTGCTCAAGTTGTCAACAAGAGCGTCTGAATCCGAGGAGGCCTATCAATTTGCTATGAGGCAACTTGATGAAGTGATGGTAGGAGTGGAGAAAATCTTGACACCGGAAGCTGAAGGTGAAGTTGTCACCTCACGTAATACTGATGCAGATGCTTCAGAAAGCGAGCCTGCAAAGATCTTTCCGAATGAGCATGTAATTGAGGATCAGGATGAAATTAACAGCGCAAATGGTGGAAAAGACAGGAGAGCCACGTCAGACAGGGGGCACTTAACAACCATGACATGTAATGGAGCTGATTCTGACAGGGTTTTGAATGTAGAAGAATCACCGCAAAGTACTGTTGTCTGTATTTCGAGCCCCCCCTCTACATATGTTTCATCTCAGCCTGCAGCACCGAATCCGATTGTGCAGGGTTTGTACAGTTTTGAAGCCAATCAAGTGGTTAACTGCATGTATGAGCAGCCTAATCTTATGGTGGACAGTCAATCTAATTCTGGCATGATGCAACCGCAAAACATCTTTTCTAACCCACAGGATTCTCCTGGTCAATCTCAACTATTGCAGGAGCCTATAATCCAGAGCACTTACCTTGAGTCCATGCCAATCAATAATCAGATGCGGCAGGGAATGGATCTTGACATCCAAAATCCTCATTCGTCGTCGTTCTTGCTGTATGACCATAGATACAGAAGTTCCGAGTCTGCATGA 2655 0.4041 MDGNRNGFGILHEAGVDVGPQMSNNLDLNVEQNCCSPIIAHAIDNQSCPPSKSVHSTNTVLGIGAEFESDDHAYRFYNKYATLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRDVNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAEHNHDNVNPNNANVVNLLNEFSVARAGEAESNNSLGPKSESALDMLNKKITAHESLDILSMNYDSYLHCARERDMREGEAGRLLCYFQRQHFENPAFFYAIQLDVDDKVSNIFWSDDSMVVDFDHFGDVICLDTICRTNEDLRPLVQFLGVNHHRQVLIFAAAFLYDGSIESFTWLFRTFINAMSGKKPKAILTEQEAVIIEAVNTVLPDTNHCTCVWQLYENTLKHLSHVVKDAESLANDLRSTIYDPKDEEEFTHSWETVLEKYNLQQNEWLRWMYREREKWAVVFGRNTFFVDIKGFHLAEILSHKFRSYLNPETDVVQFFKHFERVVGEQRYKEIEASDEMSRCLPRLMGNVVLLKHASNIYTPRAFEVFQRAYEKSLNVIVNQHSRNGSLFQYKANTFGHNRQYTVTFNSSDGTVVCSCMKFDRVGFLCDHALKVLDQRNIKVVPPQYILERWTEDARMGNLREIRQCKMQDNPKRVVASCYKDLCHKLLKLSTRASESEEAYQFAMRQLDEVMVGVEKILTPEAEGEVVTSRNTDADASESEPAKIFPNEHVIEDQDEINSANGGKDRRATSDRGHLTTMTCNGADSDRVLNVEESPQSTVVCISSPPSTYVSSQPAAPNPIVQGLYSFEANQVVNCMYEQPNLMVDSQSNSGMMQPQNIFSNPQDSPGQSQLLQEPIIQSTYLESMPINNQMRQGMDLDIQNPHSSSFLLYDHRYRSSESA* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2268 884 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 11 748 - -
Vra8g2268 884 MobiDBLite consensus disorder prediction 722 736 - -
Vra8g2268 884 SMART 26again6 576 603 IPR006564 GO:0008270
Vra8g2268 884 Pfam MULE transposase domain 285 379 IPR018289 -
Vra8g2268 884 MobiDBLite consensus disorder prediction 722 745 - -
Vra8g2268 884 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
Vra8g2268 884 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 748 IPR031052 GO:0006355
Vra8g2268 884 ProSiteProfiles Zinc finger SWIM-type profile. 565 601 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2268 Vra-Chr8 40942847 40946797 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra8g2268 MULE 3.7e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2268 - K17604 gmx:100809803 1413.67