Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2267 ATGGGCTTTCTCCGTCGAATTTTCGGCGCCAAAAAATCCTCAGACTCCAAACCCCCCAAGAAAAGATGGGCCTTCCTCAAGCCCACAGCCCGAAACAAGTCACTCCCACCGCCACCGCCCCCCTCTGCCTTCAACACCCACTTTGATTCTTCCAATCCTTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCTACCGCCGCCGTCGCCGAGGCCGCTTTAGCCGCTGCGCACGCTGCAGCAGAGGTTGTCAGACTCACGAGCGGCGCCACCGCCGCCACAAGTACCAGCAATAGCACAAGACCTGCCGCCGCGGCGCGTGTTAGACAGCTGCGGTTGCCGGAGCAGAGTGCCGCCGTTAAGATACAATCGGCGTTCCGTGGCTACCTGGCAAGGAGGGCATTGAGAGCACTAAAAGCATTGGTGAAGCTGCAAGCATTGGTTAGGGGCCACATTGTTAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAGACATTGGTGAGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCATATAATACGCTTTCTTTCAAGTCTTCCCTTTCTCACTACCCTAGATGTAGTTCCAATGCCAACTTTAGGAACGTTGACTCAGAACGACCCCGGTTTGATTCAAATTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAAGCAAACTGGAGATGCTTCATTGAAAACTGGACGCCCAGACGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACACTTCAAGTCTCACCACAATAGCAGCTCCTTTCAGACAGCACATTATTATTTGAGTTCTGACTACAGTAATGATAACTTTATGACACATGAGTCTCCATCAAAACGTTCAGCAAAGGCTCTAAACCAAAGTTTCTCATCAAGGGAGGTGTTGCAGCTGAACTCTCTGAAATTTCAGAAGGGGAAAGAGGAAGCAACTTCAAGAACTGCTGACAATAGTCCACAAGCTTTTTCAGCCAATTCTAGAAATGGAAGTGGTGCAAGGAGGGGTCCCTTTACACCTACCGGGAGTGAGTACTCCTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAACACTGAATCTTTTCAAGCCAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGACACAGTTCCACTAGGAGACCTGTTCATGTGGTGGGACCTAATTCAGACCAGGATTCAGATTTAAGAAACAAAGTCTTACCTGCTTCTAACACTGTCAACAGAATTGGGAGTAGTAATTTAAGGTGA 1317 0.4966 MGFLRRIFGAKKSSDSKPPKKRWAFLKPTARNKSLPPPPPPSAFNTHFDSSNPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGATAATSTSNSTRPAAAARVRQLRLPEQSAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSYNTLSFKSSLSHYPRCSSNANFRNVDSERPRFDSNWLNRWMELDNKCKQTGDASLKTGRPDDDKSDKILEVDTWRPHFKSHHNSSSFQTAHYYLSSDYSNDNFMTHESPSKRSAKALNQSFSSREVLQLNSLKFQKGKEEATSRTADNSPQAFSANSRNGSGARRGPFTPTGSEYSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRHSSTRRPVHVVGPNSDQDSDLRNKVLPASNTVNRIGSSNLR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2267 438 MobiDBLite consensus disorder prediction 327 349 - -
Vra8g2267 438 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Vra8g2267 438 MobiDBLite consensus disorder prediction 413 438 - -
Vra8g2267 438 Pfam IQ calmodulin-binding motif 118 137 IPR000048 GO:0005515
Vra8g2267 438 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Vra8g2267 438 PANTHER CALMODULIN-BINDING PROTEIN 1 436 - -
Vra8g2267 438 SMART iq_5 138 159 IPR000048 GO:0005515
Vra8g2267 438 SMART iq_5 115 137 IPR000048 GO:0005515
Vra8g2267 438 MobiDBLite consensus disorder prediction 318 352 - -
Vra8g2267 438 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Vra8g2267 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 161 IPR027417 -
Vra8g2267 438 Gene3D - 116 169 - -
Vra8g2267 438 MobiDBLite consensus disorder prediction 1 50 - -
Vra8g2267 438 MobiDBLite consensus disorder prediction 380 438 - -
Vra8g2267 438 MobiDBLite consensus disorder prediction 389 403 - -
Vra8g2267 438 Pfam Protein of unknown function (DUF4005) 332 398 IPR025064 -
Vra8g2267 438 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2267 Vra-Chr8 40935398 40939861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2267 1 400 IQD Protein Family AT5G62070 46.318 1.29e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2267 - - gmx:100783694 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2267 8 40935398 40939861 Vra8g2267 8 40935398 40939861 ECH
Vra1g1911 1 36300475 36305019 Vra8g2267 8 40935398 40939861 PCT