Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2264 ATGCAAAATTCATCTTCCTTCTCCTACTCAAATCAAAGGAAAATGGAGGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAAAGCCGCTCTGGAAGTGATAACTTCGATGGTGTATCTGGTGATGATCAAGACGGTGGTGATGATCAGCCACAGAGGAAGAAAAGATACCACAGACATACTCCTCACCAAATTCAAGAGCTTGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGGTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAACCGACGAACCCAAATGAAGACCCAACTGGAACGCCACGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAGTCTGATGAAGGAAGCAATGTCAAATCCAGTGTGTAACAGCTGCGGTGGGCCAGCGATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCTCGACTAAAAGATGAGTTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATTTCATCAATGACCAGTCCCATGGCTCTACCAACCTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAGTGGGCTTGGTGGTTCAAGCACTCTCGGCACTCCCTTACCAATGGGACTTGACTTGGGAGATGGAGTATTGGGCACTCAAACTGCAATGCCTGGGATTAGACCATCATTGGGGTTGATGGGAAACGAAGTTCAGCTTGAGAGATCTATGCTTATAGATCTTGCGTTGGCTGCTATGGAGGAATTGCTAAAGATGACTCAGGCAGAGAGCCCTCTTTGGATCAAGAGTTTGGATGGTGAGAAGGAAGTGTTTAATCATGAGGAGTATGCAAGGTCGTTTTCTCCTTGTATTGGTCCAAAACCCAATGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAGACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCTATGATTGCTAGAGCCATCAACCTCGATGTTATATCCAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTACAATTGCTTTCACCACTAGTCCCCGTTCGCCAAGTGAGATTCATCCGGTTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGATGTTGGTCACGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGGTGTTCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACTCTCCAGAGGCAGTGTGAATGCTTGGCTATCCTCATGTCGTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTCGGAGGAGCATGTTGAAATTGGCACAACGCATGACTAGTAACTTCTGTTCGGGGGTTTGTGCTTCGTCTGCTCGCAAGTGGGACATGCTTCACATTGGGACTCTTGGTGATGACATGAAGGTGATGACTAGGAAAAACGTGGATGACCCTGGTGAGCCTCCGGGGATCGTACTCAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACGGCAAAGGGTGTTTGATTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCGATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTTCTCCGTGCCAACGCTGTTAATGCGAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGACGCGTCGTGCTCGGTGGTGGTATATGCGCCAGTTGACGTGCAATCACTGAACGTGGTAATGAGTGGGGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTCGCCATTGTCCCCGATGGTCACTGCAACAACAGCAGCAGCAGTTGCAATGGGACAATGCAGAAGGGTGGAGGAGGTGAAGAGAGCGGCGGAAGCCTTCTGACGGTGGGGTTCCAAATTCTGGTGAACAGTCTCCCAACAGCAAAGCTGACAGTAGAGTCAGTGGACACTGTGAATAACCTGATTTCGTGCACCATTCAGAAGATCAAAGGTGCTCTGAGAGTTGCGTAA 2304 0.477 MQNSSSFSYSNQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFDGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSMTSPMALPTSNSGLELGIGRSGLGGSSTLGTPLPMGLDLGDGVLGTQTAMPGIRPSLGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEVFNHEEYARSFSPCIGPKPNGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDMLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAIVPDGHCNNSSSSCNGTMQKGGGGEESGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2264 767 CDD homeodomain 67 125 IPR001356 GO:0003677
Vra8g2264 767 Gene3D - 55 141 - -
Vra8g2264 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 765 IPR042160 -
Vra8g2264 767 MobiDBLite consensus disorder prediction 1 15 - -
Vra8g2264 767 SMART HOX_1 66 129 IPR001356 GO:0003677
Vra8g2264 767 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Vra8g2264 767 MobiDBLite consensus disorder prediction 1 75 - -
Vra8g2264 767 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Vra8g2264 767 Coils Coil 119 154 - -
Vra8g2264 767 MobiDBLite consensus disorder prediction 32 46 - -
Vra8g2264 767 SMART START_1 277 501 IPR002913 GO:0008289
Vra8g2264 767 SUPERFAMILY Bet v1-like 529 761 - -
Vra8g2264 767 SUPERFAMILY Homeodomain-like 52 125 IPR009057 -
Vra8g2264 767 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Vra8g2264 767 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Vra8g2264 767 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 765 - -
Vra8g2264 767 Pfam START domain 278 501 IPR002913 GO:0008289
Vra8g2264 767 SUPERFAMILY Bet v1-like 270 501 - -
Vra8g2264 767 CDD START_ArGLABRA2_like 272 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2264 Vra-Chr8 40902975 40909124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2264 37 764 Homeobox Transcription Factor Family AT3G61150 61.376 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra8g2264 START 1.1e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2264 K09338 - gmx:100785102 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1042 11 9487509 9493516 Vra8g2264 8 40902975 40909124 ECH
Vra8g2264 8 40902975 40909124 Vra8g2264 8 40902975 40909124 ECH