Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2262 ATGCTCCATATTCCTCTAAACAAACCAAACCCTTCTCTCATTCTTTCCTCTGCCACTCTCTTCATGGCTCTTCCCTTCAACCTCCTCCTGCTCTTCTTCTTCTGTTTTCTGCATGTCACCGCAGAACAAAACAACGACAAGCTTTACCTTCTTTCCTTCAAAGAGGCTCTCCAAAACCCTCACCTTCTCCCTTCCTGGAACCCCGCCACCCCGCACTGCCACTGGGTCGGCGTCACGTGCCAACTCGGACGAGTCACTTCGCTCTCTCTTCCCAACCGCAACCTCAGAGGAACACTCTCTTCGTCGCTCTTCTCTCTCTCTTCACTCTCTATCCTAAACCTACGTGACAACCAGCTTACGGGGGAGATCCCCGGCGAGCTCGGCGGGTTGCTTCAGCTGGAAACTCTCCGGCTCGGCTCCAACTCGCTCTCCGGGAATATCCCGCCGGAGGTGGGGCTCTTGACAAAGCTATGCACTCTCGACCTCTCCGGGAACTCGCTCGTTGGAGAAGTGCCGGAGAGCGTCGGGAATTTGACCCGGCTTGAGTTTCTCGACCTCAGCAACAACTTTTTATCCGGCTCTCTTCCGGTGAGTCTCTTTACCGGAACGAGGTCTTTGATTTCCGTTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCGCCGGAAATCGGTAACTGGCGGAACATCAGTGCCCTTTACGTGGGGATCAACAAGTTGTCTGGGACTTTGCCGAGGGAGATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCTCCTTCCTGTTCCATCGAAGGTCCTTTGCCTGAGGAAATGGCGAAGCTAAAAGCGTTGACCAAGCTTGACCTTTCTTACAACCCCTTGAGGTGTTCGATTCCCCGGTTCATTGGGGAAATGGAGAGCTTGAAAATTTTGGACCTTGTGTTTGCCCAGCTTAATGGGTCGGTGCCAGCCGAGCTTGGGAAGTGTAAGAATTTGAGGTCTGTGATGCTTTCTTTCAATTCACTCTCTGGGTCTCTGCCTGAGGAGCTTTCTGAGCTTCCCATGTTAACCTTTTCTGCTGAGAAAAATCAGCTTCATGGGCCTTTGCCTTCTTGGCTGGGGAAGTGGAGCAATATCGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTTATTCCTCCTGAACTTGGGAATTGTTCTGTGATGGAGCACCTCAGTTTAAGCAGTAATTTGCTGACAGGTCCTATTCCTGAGGAGCTTTGTGATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTTCTCTCTGGTACTCTTGAGAAAGTGTTCGTCAAGTGTAAGAACCTTACACAGTTGGTTTTGATGAATAATAGGATTGTTGGTTCTATACCCGAGTATCTTTCTGAGTTACCGTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGTGGGAAAATACCTTCTGGGATGTGGAAATCATTGGCTCTGATGGAATTCTCCGCTGCTAATAACCGTTTGGAGGGTTCCCTTCCTGTGGAGATTGGGAATGCAGTTATGCTGGAGAGGCTTGTTCTTAGCAATAATCGTCTGACAGGTGCTATTCCTAAGGAAATTGGGAGACTCTCAAATCTTTCAGTTCTTAATTTGAACGGGAATATGCTTGAAGGGAGTATCCCAACTGAGCTTGGTGGCTGCACTTCCCTCACCACACTGGACCTTGGAAATAATAAACTGAACGGGTCTATTCCTGAGAAACTGGTTGAACTGAGCCAGTTGCAGTGTCTGGTTCTTTCTCACAATAATCTATCTGGGCCCATTCCTGCCAAAAAATCTTCATATTTTCGACAGCGTAGCATCCCTGATCTGAGCTTTGTCCAGCATCTTGGCGTGTTTGATCTCTCTCACAACAGATTGTCTGGCCCCATACCCGATGAAATTGGGAGTTGTGCAGTGGTTGTGAATCTCTTAGTTAGCAACAACATGCTTTCTGGTAGCATTCCTAAATCACTCTCACTCTTGACGAATCTCACAACTTTGGATCTGTCTTACAACTTGTTGTCGGGTTCCATTCCACTGGAGCTTGGAGGTGTGCTCAAGCTCCAGGGTTTGTATTTGGGACGTAATCAGCTGTCAGGTACCATCCCTCAAAGCTTTGGAAAGTTGACTAATTTGGTGAAGCTGAATTTGACAGGAAATAAGTTGTCTGGTTCAATTCCAGTGAGTTTTGAGAACATGAAAGGGTTGACTCACTTGGATTTAAGCTATAATGAGCTGAGCGGCGAGCTTCCTTCTTCTCTTTCAGGAGTGCAAAGCCTTGTTGGGATTTACGTGCAAAATAACAGGCTTTCAGGCCAACTAGGGGAACTCTTCTCAAACTCCATGACATGGAGGATTGAGACAGTGAATTTAAGTGACAACTGCTTCAATGGGAACTTGCCGCGGTCTTTGGGAAATCTTTCTTACCTGACAAATTTGGATCTTCATGGAAATATGTTGACTGGAGACATTCCTTTAGACCTTGGGGATCTTATGCAAATGGAATATTTTGATGTTTCAGGTAATAAACTATCTGGAAGGATTCCAGAAAAGTTATGCGGCCTAGATAATCTGGTTTACCTAGATGTGTCAAGAAACAGGTTGGAAGGGCCGATACCAAGTAATGGTATTTGCCAGAGCCTACCCAGATTTAGACTTGCAGGGAACAGAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCAGGATAAAAACATTGGAAGATCAGTATTGTATAATGCATGGCGGCTTGCTGCAATTGCGGTTACACTTTTACTGCTAACTCTGAGCATTGCTTTTGTTCTGCATAAATGGATTACCAGGAGGCAAACTAATCCTGAGGAGCTTGTGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAGCCATTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTGGACATCCTTGAAGCAACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACGGTTGCAGTGAAGAAGCTTAGTGAGGCAAAAACGCAAGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTCGTTGAATTACTTGGATATTGCTCAATCGGAGAGGAGAAACTACTCGTTTATGAATATATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAAGACCGGGGCACTTGAAATCCTGAGCTGGAACAAACGTTACAAAATTGCAACTGACGCAGCTCGAGGATTAGCTTTCCTTCATCATGGTTTCATACCTCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTGCTCAACGAAGATTTTGAGCCAAAGGTTGCAGACTTTGGACTGGCAAGACTGATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGATGTTTACAGTTTTGGGGTCATTTTGCTTGAACTCGTGACTGGTAAAGAGCCAACAGGACCAGATTTTAAAGAGATTGAAGGTGGTAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGACAGGCTGCTGATGTTCTTGATCCATCAGTTCTTGATGCTGACTCAAAGCAGATGATGCTTCAAATGCTGCAAATTGCTTGTGTTTGCATATCTGACAATCCTGCAAACAGGCCTACCATGCTTCAAGTTCACAAATTCTTGAAGGGGATGAAGGGGGAGTAG 3861 0.4545 MLHIPLNKPNPSLILSSATLFMALPFNLLLLFFFCFLHVTAEQNNDKLYLLSFKEALQNPHLLPSWNPATPHCHWVGVTCQLGRVTSLSLPNRNLRGTLSSSLFSLSSLSILNLRDNQLTGEIPGELGGLLQLETLRLGSNSLSGNIPPEVGLLTKLCTLDLSGNSLVGEVPESVGNLTRLEFLDLSNNFLSGSLPVSLFTGTRSLISVDISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMAKLKALTKLDLSYNPLRCSIPRFIGEMESLKILDLVFAQLNGSVPAELGKCKNLRSVMLSFNSLSGSLPEELSELPMLTFSAEKNQLHGPLPSWLGKWSNIDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGPIPEELCDAASLLEVDLDDNFLSGTLEKVFVKCKNLTQLVLMNNRIVGSIPEYLSELPLMVLDLDSNNFSGKIPSGMWKSLALMEFSAANNRLEGSLPVEIGNAVMLERLVLSNNRLTGAIPKEIGRLSNLSVLNLNGNMLEGSIPTELGGCTSLTTLDLGNNKLNGSIPEKLVELSQLQCLVLSHNNLSGPIPAKKSSYFRQRSIPDLSFVQHLGVFDLSHNRLSGPIPDEIGSCAVVVNLLVSNNMLSGSIPKSLSLLTNLTTLDLSYNLLSGSIPLELGGVLKLQGLYLGRNQLSGTIPQSFGKLTNLVKLNLTGNKLSGSIPVSFENMKGLTHLDLSYNELSGELPSSLSGVQSLVGIYVQNNRLSGQLGELFSNSMTWRIETVNLSDNCFNGNLPRSLGNLSYLTNLDLHGNMLTGDIPLDLGDLMQMEYFDVSGNKLSGRIPEKLCGLDNLVYLDVSRNRLEGPIPSNGICQSLPRFRLAGNRNLCGQMLGINCQDKNIGRSVLYNAWRLAAIAVTLLLLTLSIAFVLHKWITRRQTNPEELVERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVELLGYCSIGEEKLLVYEYMVNGSLDLWLRNKTGALEILSWNKRYKIATDAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAADVLDPSVLDADSKQMMLQMLQIACVCISDNPANRPTMLQVHKFLKGMKGE* 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2262 1286 SUPERFAMILY L domain-like 617 902 - -
Vra8g2262 1286 Pfam Leucine rich repeat 719 778 IPR001611 GO:0005515
Vra8g2262 1286 Pfam Leucine rich repeat 516 574 IPR001611 GO:0005515
Vra8g2262 1286 Pfam Protein tyrosine and serine/threonine kinase 1011 1280 IPR001245 GO:0004672|GO:0006468
Vra8g2262 1286 SUPERFAMILY L domain-like 66 317 - -
Vra8g2262 1286 Gene3D Ribonuclease Inhibitor 43 201 IPR032675 -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 103 368 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 795 1284 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 353 691 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 671 783 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 29 136 - -
Vra8g2262 1286 Gene3D Transferase(Phosphotransferase) domain 1 1084 1286 - -
Vra8g2262 1286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1130 1142 IPR008271 GO:0004672|GO:0006468
Vra8g2262 1286 Gene3D Ribonuclease Inhibitor 353 609 IPR032675 -
Vra8g2262 1286 PRINTS Leucine-rich repeat signature 181 194 - -
Vra8g2262 1286 PRINTS Leucine-rich repeat signature 669 682 - -
Vra8g2262 1286 SMART LRR_sd22_2 178 199 - -
Vra8g2262 1286 SMART LRR_sd22_2 561 587 - -
Vra8g2262 1286 SMART LRR_sd22_2 741 767 - -
Vra8g2262 1286 SMART LRR_sd22_2 442 465 - -
Vra8g2262 1286 SMART LRR_sd22_2 839 865 - -
Vra8g2262 1286 SMART LRR_sd22_2 669 690 - -
Vra8g2262 1286 SMART LRR_sd22_2 815 836 - -
Vra8g2262 1286 SMART LRR_sd22_2 154 173 - -
Vra8g2262 1286 SMART LRR_sd22_2 717 738 - -
Vra8g2262 1286 ProSiteProfiles Protein kinase domain profile. 1008 1280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2262 1286 SUPERFAMILY L domain-like 355 604 - -
Vra8g2262 1286 SMART serkin_6 1008 1280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2262 1286 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 795 1284 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 103 368 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 29 136 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 671 783 - -
Vra8g2262 1286 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 353 691 - -
Vra8g2262 1286 ProSitePatterns Protein kinases ATP-binding region signature. 1014 1037 IPR017441 GO:0005524
Vra8g2262 1286 Gene3D Phosphorylase Kinase; domain 1 971 1083 - -
Vra8g2262 1286 Gene3D Ribonuclease Inhibitor 202 352 IPR032675 -
Vra8g2262 1286 Gene3D Ribonuclease Inhibitor 610 913 IPR032675 -
Vra8g2262 1286 SUPERFAMILY Protein kinase-like (PK-like) 989 1280 IPR011009 -
Vra8g2262 1286 SMART LRR_typ_2 863 888 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 562 585 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 178 202 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 106 130 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 815 839 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 669 693 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 717 740 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 621 645 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 275 299 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 537 561 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 154 177 IPR003591 -
Vra8g2262 1286 SMART LRR_typ_2 741 765 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2262 Vra-Chr8 40870180 40874543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2262 50 1281 Receptor kinase-like Gene Family AT5G07280 59.451 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vra8g2262 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2262 - - gmx:100780446 2187.92