Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2261 ATGACTCCGCGGCTGGAACACAACAGCGACTCCACCAGCGCTGAGTCTCAGAGATCCATACCCACACCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACACCATCGATGATGTCATTTCCTGGAACGATTCTGGATCATCCTTCATCGTTTGGAACACCACCGTTTTTGCCAGGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTCAGAAAAGTTGTACCTGATCGGTGGGAATTTTCCAACGAGTGTTTCCGAAGAGGCCAGAAGCAACTTCTCTGCGAAATTCAGCGGAGGAAGATCCTCTCCTCGTCGCCGCCAGCCGGAGCAACGGCTAGCGTGGCGGTTCCGTCGCCACTGGCGCTCCCCGCGATTCCAATAGCGAAGCCGATCGTGTCGCCGTCAAACTCAACGGAGGAACAGGTGATCTCGTCGAACTCTTCGCCGTCGAGAGTTCCGGCAGAGCTGTTGGACGAGAACGAGCGGCTGAAAAAGGAGAACATTCTTTTGATGAAGGAATTGGAAGAGATGAGATCGCTATGCAACAATATACTCAATCTCATGTCGAATTACGCAACCTCTAGAGCCGACGGTGGTACCGAGGTGGTAAAGACGCTTGGTTTGATGCCGTCGAAGCGGTGCTCTGGTGAGGACGCGGCGGAGGGGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGTACAAAGCGAGCGAGAGAGGAAGGACGTGGAGAGGAGTATGATACGGTTTTGAGTCTTCATCCGTTCCACGCGGACGTGAAATCTGAACCGTTAGATTTGGAAAGACATGGAGAAAACAGAAGTACTTCGTGGCTAAATCACTGTCGTACAGCAAATGAGAGAGAGTGTGTAATTGATACACGACGTTGTAAAAGCTAG 939 0.5133 MTPRLEHNSDSTSAESQRSIPTPFLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGQKQLLCEIQRRKILSSSPPAGATASVAVPSPLALPAIPIAKPIVSPSNSTEEQVISSNSSPSRVPAELLDENERLKKENILLMKELEEMRSLCNNILNLMSNYATSRADGGTEVVKTLGLMPSKRCSGEDAAEGMNPKLFGVAIGTKRAREEGRGEEYDTVLSLHPFHADVKSEPLDLERHGENRSTSWLNHCRTANERECVIDTRRCKS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2261 312 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2261 312 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2261 312 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2261 312 Coils Coil 174 194 - -
Vra8g2261 312 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2261 312 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 289 IPR027725 -
Vra8g2261 312 Gene3D - 16 114 IPR036388 -
Vra8g2261 312 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 289 - -
Vra8g2261 312 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g2261 312 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Vra8g2261 312 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2261 Vra-Chr8 40865929 40867394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2261 14 303 HSF AT5G62020 47.937 4.09e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra8g2261 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2261 K09419 - gmx:100780987 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2261 8 40865929 40867394 Vra8g2261 8 40865929 40867394 ECH
Vra1g1904 1 36170347 36171919 Vra8g2261 8 40865929 40867394 PCT