Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2250 ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAACTCAGAAACTACATCCTTAAACAAGGTCATGGCTGTTGGAGTTCTGTTCCCATTAAGGCAGGCTTGCAAAGAAGTGGAAAGAGTTGCAGATTAAGATGGATAAACTATCTGAGACCAGGACTAAAGAGAGGGAAGTTCACCAAACAGGAAGAAGAGACAATCCTCACCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGATAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGAGGCAAAAGCTAAGGAAAAGGGTTCTCATAACCTAATGAAGTATGCTAGCTCAAGCTCCGATACCATGGACTCTTCAAACTCTCTCCAAAATCTTGCAACTCAAGGTACACAGAGTTGTAACTTCACCAAAGAGGCTTGTCAAAGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAGTTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTCTTCAGGAGGCTGCAATCCATGACATGTCAGATATACCCTTTGGTGGAGGGTACCACAGATGCTTGGCTAACATTTCAGCCCCTGAGATTTTAAATTCAGAGCTGAAGTATGCAAATCAGATGGTGGAAAATGGTTTCATCCTGCCTGGAGTTGACTTGATGAGTAGCAATTTCAGCATGAGCAATGATGCGATAATGTACATATGA 810 0.4123 MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGLQRSGKSCRLRWINYLRPGLKRGKFTKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKEAKAKEKGSHNLMKYASSSSDTMDSSNSLQNLATQGTQSCNFTKEACQSSLPKLLFAEWLSLDQVNSANSVDSFGLRNGFDQNSTLQEAAIHDMSDIPFGGGYHRCLANISAPEILNSELKYANQMVENGFILPGVDLMSSNFSMSNDAIMYI* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2250 269 CDD SANT 18 62 IPR001005 -
Vra8g2250 269 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vra8g2250 269 Gene3D - 15 67 - -
Vra8g2250 269 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vra8g2250 269 Gene3D - 70 116 - -
Vra8g2250 269 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vra8g2250 269 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vra8g2250 269 PANTHER MYB TRANSCRIPTION FACTOR 154 259 - -
Vra8g2250 269 PANTHER MYB TRANSCRIPTION FACTOR 1 153 - -
Vra8g2250 269 PANTHER MYB DOMAIN PROTEIN 55 1 153 - -
Vra8g2250 269 PANTHER MYB DOMAIN PROTEIN 55 154 259 - -
Vra8g2250 269 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 215 224 IPR017972 GO:0005506|GO:0016705
Vra8g2250 269 SMART sant 14 64 IPR001005 -
Vra8g2250 269 SMART sant 67 115 IPR001005 -
Vra8g2250 269 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra8g2250 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra8g2250 269 CDD SANT 70 113 IPR001005 -
Vra8g2250 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2250 Vra-Chr8 40755699 40758277 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2250 7 177 MYB Transcription Factor Family AT5G52260 52.660 4.13e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g2250 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2250 K09422 - gmx:778167 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2250 8 40755699 40758277 Vra8g2250 8 40755699 40758277 ECH