Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2235 ATGGTTAGCCAGAGGCAGCGATTGGCTCGCAAGCGATTCAAAGCAGAGCACCCTGAACTGTTTCCGAAGGCCGAGCCCACACCCCCCAAAGACCCTAACAAGAAGAAGAAGAAGAGTAGCGCGTTCAAGCGCAAACGGGCCGAGTCCAAGTCCGGCTCCGGTAAAAGACAACCTCTTAGAGTCCCCGGGATGAAGCCCGGCGATAGTTGCTTCATCTGCATGGCCAAAGACCACATCGCCAAGCTCTGCCCCCAAAAGACCGAATGGGAAAAAAACAAGATATGTTTGCGGTGTCGTCGACGCGGTCACAGAGCTAAGAACTGCCCCGAGGTACAAGATGCCGCCAAGGATGTCAAGTATTGCTATAACTGTGGGGAAACTGGTCACTCTCTCTCGCATTGTCCGTACCCTCTTGAGGAAGGAGGGACAAAGTTTGCCGAGTGCTTTGTTTGTAATCAGCAGGGACACTTGAGTAGAAACTGTCCTCAAAATACTCATGGCATTTATCCAAAGGGTGGTTGCTGTAAAATTTGTGGTGGTGTGACACATTTGGCTAAAGATTGTCCTGACAAAGGATCGCAAGGATCTGTTGCTGCTAATGGGCGTGCTGGTAGACCAATGAGAATTGAAGAGAGGCCCAGGGGCCAGGTTACCAAATTTATTAGTGGAGATGATATTGAGGATGACTTCATGATAGATGACATACGCAGTGGCGATAATAACAAGTCAGCAAATTCAAACGATGTCAATGTAACAGCAAAGAAGAAAGATCCTAAAGTTGTGATATTTAACTAA 795 0.4805 MVSQRQRLARKRFKAEHPELFPKAEPTPPKDPNKKKKKSSAFKRKRAESKSGSGKRQPLRVPGMKPGDSCFICMAKDHIAKLCPQKTEWEKNKICLRCRRRGHRAKNCPEVQDAAKDVKYCYNCGETGHSLSHCPYPLEEGGTKFAECFVCNQQGHLSRNCPQNTHGIYPKGGCCKICGGVTHLAKDCPDKGSQGSVAANGRAGRPMRIEERPRGQVTKFISGDDIEDDFMIDDIRSGDNNKSANSNDVNVTAKKKDPKVVIFN* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2235 264 MobiDBLite consensus disorder prediction 1 63 - -
Vra8g2235 264 MobiDBLite consensus disorder prediction 12 35 - -
Vra8g2235 264 ProSiteProfiles Zinc finger CCHC-type profile. 95 110 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 Gene3D - 118 169 - -
Vra8g2235 264 Gene3D - 63 117 - -
Vra8g2235 264 ProSiteProfiles Zinc finger CCHC-type profile. 121 135 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 Pfam Zinc knuckle 120 135 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 SUPERFAMILY Retrovirus zinc finger-like domains 116 164 IPR036875 GO:0003676|GO:0008270
Vra8g2235 264 SUPERFAMILY Retrovirus zinc finger-like domains 62 111 IPR036875 GO:0003676|GO:0008270
Vra8g2235 264 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Vra8g2235 264 PANTHER OS04G0555800 PROTEIN 1 264 - -
Vra8g2235 264 ProSiteProfiles Zinc finger CCHC-type profile. 148 163 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2235 95 191 C2H2 Transcription Factor Family AT5G20220 28.947 3.67e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2235 - - gmx:121174300 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2235 8 40670934 40675674 Vra8g2235 8 40670934 40675674 ECH