Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2232 ATGCAGGCTCCAACAACACTCACCGGATTGCTCCACCGCGTCGCCGGAATATTCCCTTCCCACCATGCCGTCTCTGTCTCGGGCAAATTCCAACTCACACACTCCCGCCTCCACCACCTTGTCGAACGCGCTGCCGCACGCCTCCTCTTCGCCGGCATCAAACCCGGCGATGTCATCGCACTCACCTTCCCCAACACCGTCGAGTTTATTATAACGTTTCTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACTCGGCTTACACGGCGGAAGAGTTCGAGTTTTATTTATCCGACTCAGAGTCAAAGCTGTTAATAACATCAAAAGAAGGGAACGAACCGGCTCAAGCCGCGGCTTCCAAGCTTAGCATTCCGGTATCAACAGCTTCGCTCGACGAAGCAGAAGCCGAAGAGCTCAGTCTCTCCCTGAGTTACACCGAGTCACTGACCGCCTCGATTTCCGAACTCGTTAACGACGAGTCCGACGTGGCATTGTTCCTCCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTACCATTGACGCAGAACAACTTGGCCTCATCGGTGGAGAACATCAAATCCGTGTACAAACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCATTGTTCCACGTCCACGGGTTAATCGCCGCGTTGCTGAGTTCACTAGCCGCCGGAGCCTCCGTGACGCTCCCGGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACGTACAACGCCACGTGGTACACCGCGGTTCCTACGGTACACCAAATATTGTTGGAGCGTCATTTGAAAACCCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTTATATTGGAGCGGTTGGAGGAAGCGTTTGGGGCACCGGTTTTGGAGGCTTATGCTATGACGGAAGCGTCGCATTTAATGTCGACAAATCCATTACCCGAAGATGGGCCTCATCGGGCCGGGTCCGTTGGAAAGGCCGTGGGCCAGGAAATGGCAATATTAGACGAGAAGGGTGAGATTCTAAAGAATGATGTGAAGGGTGAGGTTTGTATTAGGGGACCCAATGTTACGAAAGGGTATAAAAATAACCCTGATGCCAATATTTCTGCCTTTGAATACGGGTGGTTCCACACTGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCATCTGGTGGGTCGGATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCTGTCCTTCTATCTCATCCAGAAATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGATAAATATGGCGAAGAGATAAAGTGTGCGATAATCCGAAAAGAAGGATCAAAGATAGATGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAATCTTGCAAGCTTCAAAGTCCCTAAAGAGGTCTTCATCACTGATTCTTTACCAAAGACCGCCACTGGCAAGATTCTGAGGCGTCTTGTAGCACAACACTTCATTTCTCAAACTTAA 1548 0.52 MQAPTTLTGLLHRVAGIFPSHHAVSVSGKFQLTHSRLHHLVERAAARLLFAGIKPGDVIALTFPNTVEFIITFLAVIRARATAAPLNSAYTAEEFEFYLSDSESKLLITSKEGNEPAQAAASKLSIPVSTASLDEAEAEELSLSLSYTESLTASISELVNDESDVALFLHTSGTTSRPKGVPLTQNNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLIAALLSSLAAGASVTLPAAGRFSASSFWSDMLTYNATWYTAVPTVHQILLERHLKTPEPVYPKLRFIRSCSASLAPVILERLEEAFGAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKAVGQEMAILDEKGEILKNDVKGEVCIRGPNVTKGYKNNPDANISAFEYGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPEIAQAVAFGVPDDKYGEEIKCAIIRKEGSKIDEAEVQRFSKKNLASFKVPKEVFITDSLPKTATGKILRRLVAQHFISQT* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2232 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
Vra8g2232 515 Gene3D - 1 410 IPR042099 -
Vra8g2232 515 PANTHER OXALATE--COA LIGASE-LIKE 1 514 - -
Vra8g2232 515 SUPERFAMILY Acetyl-CoA synthetase-like 5 513 - -
Vra8g2232 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Vra8g2232 515 PANTHER ACYL-COA SYNTHETASE 1 514 - -
Vra8g2232 515 Pfam AMP-binding enzyme 16 417 IPR000873 -
Vra8g2232 515 Gene3D - 411 512 IPR045851 -
Vra8g2232 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2232 Vra-Chr8 40646756 40648813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2232 5 514 Monolignol Biosynthesis Gene Families AT4G05160 31.619 8.06e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2232 K22133 - gmx:100783685 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2232 8 40646756 40648813 Vra8g2232 8 40646756 40648813 ECH
Vra1g1840 1 35233696 35237126 Vra8g2232 8 40646756 40648813 PCT