Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2228 ATGGAGTCTCTAGGGCTAGTTGGGGTTCTTGTTGCCTTCTCAGCTGCACTTTGCCTCTTTTTGCTCTTCATACTAACTTTTTCTTGGTGGGTTTTCCCTAACCAAACACTTAAGAAGCTTAAGAAATGTGGGTTCGGAGGTCCAATCCCAAGTTTTCCTCTTGGAAACATTAAAGAGATGAAAACAAAGAATAACATTCAATCTTCAGTTGCATCCTCAAATCTCACTCATGATATACACTCTAACGTTTTTCCCTACTTTTCTAGCTGGCAGAAATCACATGGTAAAGTTTTTGTGTACTGGTTGGGCACGGAGCCATTCCTGTACGTTGCAGAGCCAGAGTTCTTGAAGAAAATGTCGACAGTGGTGGTGGCCAAGCGATGGGGAAAACCAAGTGTTTTTAGAACTGACAGAGACCCCATGTTTGGGAGTGGTTTGGTCATGGTTGAGGGCAACGAATGGGTTCGTCACAGGCACATTGTTGCCCCTGCCTTCAATCCCATTAACTTGAAGGACATGGCGAACATGATGGTTGATTCCACGAATCAAATGATAGACAGATGGTTTACCCGAATAAACTCCGGGAACCCCGAAATCGACGTGGAGAGAGAGATTATAGCAACGGCTGGAGAGATCATAGCAAGAACAAGTTTTGGCATGAAAGATGACAATGCAAGAGATGTTTTCGACAAATTAAGAGCCTTGCAAATGACCCTTTTTAAGACCAATCGATACGTAGGTGTTCCCTTTGGGAAGTATTTCAACGTAAAGAAAACATTAGAGGCGAAGAAACTCGGGAAAGAAATCGACGAACTCTTGTTGTCGATCATAGAATCTCGGAAGAAGTCGGGGAGGAAAAATGGTCAGCAAGATCTGTTAGGTCTGTTGCTGCAAGAAAATCACGAGGTTGACGGAAGGTCGGGTAAGACGTTAACATCGCGAGAAGTTGTTGACGAATGCAAGACCTTCTTCTTCGGTGGGCATGAAACCACAGCACTTGCCATCACGTGGACCTTGCTGCTTCTAGCCATGCACCCAGATTGGCAAACCCAGTTGAGAGATGAGATACGAGAAGTGGTGGGAAACACCGAAGAACTTGATATTTCTATGCTCGCCGGTTTAAAGAAGATGAAATGGGTTATGAATGAAGTTCTAAGACTGTACCCACCAGCACCAAATGTGCAGAGGCAAGCAAGAGAAGACATAAAAGTGGATGATGTAACGGTGGCTGATGGAACGAACATGTGGATAGATGTGGTGGCGATGCACCATGATCCTGAACTGTGGGGAAATGATGCGAATGAGTTCAGACCAGAGAGGTTCATGAATGATGTGAATGGTGGATGCAAGCACAAGATGGGTTATTTGCCTTTTGGTTTTGGAGGGAGAATGTGTGTTGGTAGAAATCTTACCTTTATGGAGTACAAGATCGTTTTAACCCTTCTTCTCTCTAGGTTTAGTTTCCAGATTTCACCTTCTTACCATCACTCACCATCTATTATGCTCTCCCTAAGGCCTACCTATGGTCTTCCACTCATTCTTCATCCACTTTAA 1554 0.4414 MESLGLVGVLVAFSAALCLFLLFILTFSWWVFPNQTLKKLKKCGFGGPIPSFPLGNIKEMKTKNNIQSSVASSNLTHDIHSNVFPYFSSWQKSHGKVFVYWLGTEPFLYVAEPEFLKKMSTVVVAKRWGKPSVFRTDRDPMFGSGLVMVEGNEWVRHRHIVAPAFNPINLKDMANMMVDSTNQMIDRWFTRINSGNPEIDVEREIIATAGEIIARTSFGMKDDNARDVFDKLRALQMTLFKTNRYVGVPFGKYFNVKKTLEAKKLGKEIDELLLSIIESRKKSGRKNGQQDLLGLLLQENHEVDGRSGKTLTSREVVDECKTFFFGGHETTALAITWTLLLLAMHPDWQTQLRDEIREVVGNTEELDISMLAGLKKMKWVMNEVLRLYPPAPNVQRQAREDIKVDDVTVADGTNMWIDVVAMHHDPELWGNDANEFRPERFMNDVNGGCKHKMGYLPFGFGGRMCVGRNLTFMEYKIVLTLLLSRFSFQISPSYHHSPSIMLSLRPTYGLPLILHPL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2228 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Vra8g2228 517 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 5 512 - -
Vra8g2228 517 Gene3D Cytochrome P450 29 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 Pfam Cytochrome P450 80 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 SUPERFAMILY Cytochrome P450 77 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2228 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 5 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2228 Vra-Chr8 40587355 40589726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2228 12 517 Cytochrome P450 AT5G52400 59.766 0.0 644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2228 8 40587355 40589726 Vra8g2228 8 40587355 40589726 ECH
Vra1g1835 1 35018121 35021143 Vra8g2228 8 40587355 40589726 PCT