Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2224 ATGTCAGAATCTGAGGAAGAAAATACAGATTGTGTTCCAAGGTCAAAGCCTGCAGAGGAAGGTGGATGCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGGCTCCAATCCCATGTCACCTTTTCTGTTCTCCTCCAACTCTGACCAGCCTTACTCTCCTCTGTGGGCTTTCTCTGATGGAGAAGACACCAAGTTTCCAGCTTCTGCCTTTTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGAGGAGAATGATGACAACAAGAAGATTTTGCCACCACTTGCGCCTATGCCACCACTGGAAAATGTGGGCGGATACTGTGTAATTAAGGAAAGGATGACACAAGCGCTTCGATACTTCAAAGAGTTGACTGAACTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACACAGTAATGGGCTGCATCAGTATAGAACGGTCTCTCTGATGTACACGTTTGCTGTGGATGGGGAGAACGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCAGAATGGACTCCCAATGTTCTCTATTATTCTAGTAAAGAGTACCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGATCTTTGGCTTTGCCCGTGTTTGAACCTGCATTGCAGTCATGTATTGGTGTACTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATTCTGACAGTGGTTTGTGAAACTCATAATTTACCTCTGGCGCAAACATGGATTCCCTGTAAGCATCGGAGTGTCTTGGCCCAAGGTGGTGGTGTGAAGAAAATTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACGTAGCATTCTATATTATAGATGCCCATTTATGGGGTTTCCGTGAGGCCTGTGTCGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAATTCTGCAAGACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTACGTATTAGAGTTTTTTCTGCCTCCTAGGATCACAGACTTTCATGAACAAAAGACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTCAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCGGTTGAAATTATTGAAGCAACAATTGAAAGAATTCACACGAGGCTTGAATCCATACCAATTGCCCCATCTATTAGATCACCACCTAGACCTGATACTTCACCAAATATGGAGGAGGAAGGTCCACTTGATCCATCAGAGCAACACATATTGATGTACTGTAATGGTACCAATCATGGATCGAATCTCAGTGATCAAGCAGGTGGGAAAATTGATCATATGATTACTTTAGAGACTAAAACCTCAAAGAAACCCTTAGAGAGGAAGCGTGGAAAAACCGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAATAAGGTTAATCGTTCCCTGTCCAAGCTGAAGCGTGTTATTGAGTCTGTCCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCGGCACAAGTCCACTTCCCATTGCAGTTGGCTCCCTTCCTGAACCATCTACTCCAGACAAGTTCAGCCAGCCAGTCTCAATGAACATTAGACCATCAGAACCTCAGATGAAAGTGAATGAATTGAATGCCTCCAAAGAACTAGAAACAAACAGAGAAGCAGGAATGGAAGATCAATTGGTAGGAGGAAGAATACATAATATTGAGAGAGTTACCAATGATAAAAGAGGTTTTACTCAGGAGATTGGGAAAGAACCGAAAAGGACTAGAACTGGAAGTGGCTCAAGTGAGGATAGCACAAACCCTCCTTCTCACGGTTCATGGCATGACAGTATCCCAAATGAAAGTTCACATGTAAAAGATTTATTCATTACTTCCAACCATGATCAATGTGCCGTGCTAAGGAGATCACCAGAGTCAACACTGCAGCCTGCCACTAACACACCGAATCAGTCCACTCCTTTCCGTATGCCTGAATTTGTGGCTGCAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCGGTAGCTGAAGCCATTTTGGAGGACCTTGTTCCTGAAGCTTGTGGAACTAATCCTCCAGCCTTAGATTTGTCTCCCAAGCAAAGCATGGGTGCTCCTAATAAAACAGTGACACCTTTTGCAGCAACGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTCCGGGTCTCATTGACATGTGGCATTGTGGAACTAAAAGAAGAAGTTGCCAAAAGATTGAAACTTGAGATGGGTACATTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTGTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATGACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGAGAGTGA 2967 0.4344 MSESEEENTDCVPRSKPAEEGGCTMDFDLDLETSWPLDHMAFGSNPMSPFLFSSNSDQPYSPLWAFSDGEDTKFPASAFSDCHKIFPCDSNSIAEKPEENDDNKKILPPLAPMPPLENVGGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYTFAVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCIGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKICSSFDGSCMGKVCMSTTDVAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRITDFHEQKTLLASILATMKQHFQSLKIASGVELEDGSVEIIEATIERIHTRLESIPIAPSIRSPPRPDTSPNMEEEGPLDPSEQHILMYCNGTNHGSNLSDQAGGKIDHMITLETKTSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLGTSPLPIAVGSLPEPSTPDKFSQPVSMNIRPSEPQMKVNELNASKELETNREAGMEDQLVGGRIHNIERVTNDKRGFTQEIGKEPKRTRTGSGSSEDSTNPPSHGSWHDSIPNESSHVKDLFITSNHDQCAVLRRSPESTLQPATNTPNQSTPFRMPEFVAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGAPNKTVTPFAATKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEMGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDMTSNLGSSCESSGE* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2224 988 Pfam RWP-RK domain 584 632 IPR003035 -
Vra8g2224 988 MobiDBLite consensus disorder prediction 1 25 - -
Vra8g2224 988 CDD PB1_NLP 894 974 IPR034891 -
Vra8g2224 988 MobiDBLite consensus disorder prediction 750 772 - -
Vra8g2224 988 ProSiteProfiles PB1 domain profile. 893 975 IPR000270 GO:0005515
Vra8g2224 988 SMART PB1_new 893 975 IPR000270 GO:0005515
Vra8g2224 988 Gene3D - 890 974 - -
Vra8g2224 988 MobiDBLite consensus disorder prediction 728 749 - -
Vra8g2224 988 MobiDBLite consensus disorder prediction 792 811 - -
Vra8g2224 988 Pfam PB1 domain 893 974 IPR000270 GO:0005515
Vra8g2224 988 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 987 - -
Vra8g2224 988 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Vra8g2224 988 PANTHER PROTEIN NLP8 3 987 IPR045012 GO:0003700
Vra8g2224 988 MobiDBLite consensus disorder prediction 728 772 - -
Vra8g2224 988 MobiDBLite consensus disorder prediction 509 531 - -
Vra8g2224 988 SUPERFAMILY CAD & PB1 domains 889 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2224 Vra-Chr8 40521825 40526233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2224 259 988 NLP Transcription Factor Family AT4G24020 52.624 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vra8g2224 PB1 1.4e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2224 - - gmx:100786118 1761.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1833 1 34948877 34954133 Vra8g2224 8 40521825 40526233 PCT