Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2221 ATGGGTAGCATCGTCGTGGAAGACGCCGATACTGACACAGTGTATGTGGCGGTGGGAAACAACGCGGAGAAGACGCAACAACTGTTGCATTGGACGGTTAATAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTCACTCCCTCAATTCGTTCTACAAGAATCTCTCTGGGTATGAACCAAAAGACCTTCCAATCCAGGCATTCCAGGATCAGGGAAATCAATCAGTGCACGAACTTCTAGACCAATACATTCTTGATCTGGTTCCTGCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAGAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGGATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTATTTTTATACGTGAACAAGCATTGCTATCATGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGCAAGCATACTTCTGACATAGAGGGTGGGCCTGCATTGTTGGTGCTCAATTCAAATACAGAAAAGTCTACATCGAAATGGACTCCGGATGCATTGAAATGTTTAGATTCTGGTGATATGAAAGAAATCCAAAGTATCAGTTCCAACCGGTCCTTAAATACAAGATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCATTTGAAAGCCAGTGTGCTCAGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAATCAGCAGGATGAAATACTAGAAGAATTGCAAATGGTCAAAGACCAAAATTCTGCACTTATGAGCCAAATTTCTGAGTCCCAGTTTACAGTAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTTTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAACATTCGGTGAAGCGGATACTCCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTCATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTCCGCAACATGCATGTTGCCATTAAAATGTTACCCTCTTACGGTCAAGAGAGTCTATCAAAATTCCAACATCAGGTAGAGATCTTGAGTAGGGTAAGACATCCAAATTTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATGTCTATTGCTACAGATATATGCTCTGCTCTAATCTTCATTCACTCCAGCAAGCCTTGTATTATCCATGGGAATTTGAAACCCAGTAAAGTTCTCCTCGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTTCAGCAAAGTTTGGATTCAGCTGATGCAAACACAATATATAATAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCCGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTTTGGGGTTAGTAAGGAATGTGAAGTGTGCATTGGAAAAGGAAAACCTTAAGGCAGTCTTGGATTTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTGCTGGCATATTTAGCACTGAGGTGTTGTGAAAAGAATTGGTTGAACAGGCCAGACCTTGTGTCTGAAATTTGGAGTGTTCTGGAACCATTCAAAGCTATTCGCGTTGACAAACCATATTTGATTTCTAAGAAGCTTCGTCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGGTGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTGGTACCTAACTATGCTCTGCATAATGCAATTCTGGAGTGGCAACAACAGTAA 2196 0.4158 MGSIVVEDADTDTVYVAVGNNAEKTQQLLHWTVNNFSGKNVCLLHIHRPHSLNSFYKNLSGYEPKDLPIQAFQDQGNQSVHELLDQYILDLVPAGVRACKLLIEMDDIEKGITEAIAQHSIRWLVVGAAADGYNMGKLAKQDSEKAIFIREQALLSCNIWFICKGNLICTRVYSKHTSDIEGGPALLVLNSNTEKSTSKWTPDALKCLDSGDMKEIQSISSNRSLNTRWSFNKVMDRSKLADLMFHEDEAFESQCAQEIRRRKEVEEQLARSKQEVQKMKNQQDEILEELQMVKDQNSALMSQISESQFTVTEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRTFGEADTPFSYQVEFPAFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGQESLSKFQHQVEILSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRMSIATDICSALIFIHSSKPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADANTIYNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRNVKCALEKENLKAVLDFSAGEWPLYQTELLAYLALRCCEKNWLNRPDLVSEIWSVLEPFKAIRVDKPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2221 731 Pfam Protein tyrosine and serine/threonine kinase 385 633 IPR001245 GO:0004672|GO:0006468
Vra8g2221 731 Gene3D Transferase(Phosphotransferase) domain 1 453 652 - -
Vra8g2221 731 Pfam U-box domain 662 730 IPR003613 GO:0004842|GO:0016567
Vra8g2221 731 ProSitePatterns Protein kinases ATP-binding region signature. 386 407 IPR017441 GO:0005524
Vra8g2221 731 Gene3D Phosphorylase Kinase; domain 1 354 452 - -
Vra8g2221 731 PANTHER OS02G0152300 PROTEIN 8 201 - -
Vra8g2221 731 PANTHER OS02G0152300 PROTEIN 242 730 - -
Vra8g2221 731 ProSiteProfiles Protein kinase domain profile. 380 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2221 731 SUPERFAMILY Protein kinase-like (PK-like) 356 641 IPR011009 -
Vra8g2221 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 731 IPR013083 -
Vra8g2221 731 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 8 201 - -
Vra8g2221 731 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 242 730 - -
Vra8g2221 731 CDD RING-Ubox_WDSUB1_like 666 707 - -
Vra8g2221 731 ProSiteProfiles U-box domain profile. 661 731 IPR003613 GO:0004842|GO:0016567
Vra8g2221 731 SUPERFAMILY RING/U-box 659 731 - -
Vra8g2221 731 Coils Coil 255 296 - -
Vra8g2221 731 SMART Ubox_2 665 728 IPR003613 GO:0004842|GO:0016567
Vra8g2221 731 CDD STK_N 13 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2221 Vra-Chr8 40497005 40506709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2221 12 731 U-box Gene Family AT2G45910 40.680 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra8g2221 PK_Tyr_Ser-Thr 1.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2221 - - gmx:100787938 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2221 8 40497005 40506709 Vra8g2221 8 40497005 40506709 ECH