Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2220 ATGCCAGTTGCAAAACTACCGGCCTCAGGCACAACCGGTTTCACAAAAACAGATGATGGAAATGATTCTTTAGATACAATATTCAGACAAGCAATTGGAAAAGAACCGTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTGCAGCACCGGTTGAAAAAGCTTGATAAGGATTCTAAAAAGAATAGGGAACTTTTAGGGGCATATTGGGATAAGCTCTCTATAGAAGAGGCAAAGGAAGTTGTTTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCGCAATACTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCATCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTGTCGATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACAAAAAAACCTAGTTGCTTGTACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAGTCTTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAAAAGCTACTTGTGGAAGAGGAAGAAGCTGCTCAGAAAAGAAAAGCTGAGATTTTAGAGAGGAAACGGCAGAAAAAGCTCAGACAGAAAGAACACAAGACAAAGGAGCAAATTGAAAACAACACAGAAACTAAAGGAAACATAAACAGCGCAGGCGAGGATGTATCACCAGGAGAAGCGTCTTTGGGTACACGTGACTTCGATGCACATAATCCAGATATTTTTGCGGATCATTCTCCTCCTCCACCACATGTAACTTCTCACTGCTTAGACGCTAATGATGTTATAGAAAAGGATACGCTGTCAGGGTATGATGATTGTGACACGGATCAGTATATAGAGCGGCAGACACTACCAGGACATAATCGCCGGGGCACAATGCCTGCCAGATGGCAAGGGCTACCAAAATCACAATGGGCTAGAGCCAATGGTTTGAATGCAGGCCAGAATTCTCAACCGACGAAGCTTGGAGTTATTCAAAAGCATAGAACCAGCCATGATCTTAGGGTAGCTCCTATAATCAATGGCAGTAAGGTTTGGAGTCGAAAACCTAAAGCAGAATCTAATGATTTGGTTCTAAAAAACAAACTGCTGAAAGAACCTGACAAAGTTAAAAATCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGTAATTGTTGCCATTCCGGAGGTAACTTTATGGCACCCCAGCGGGATTGCTCGGCAGGGAATCTGTCCAAGCTGAATACTGCTCAGGAGAAACCAGGAAGCAACGGTCGTTTAACAGCTAAGTTTTGGAGGCCTGTTAGCCAGCATGGAACTAAAGACCCATTTCCACTTCAAAATGGTGGGACAGAAGCTGATGCTATAAATGGAAAAATTGATGAAAATTCGTCTGGTCAAAGTAGTTTAAGGTTGTGTAGTGTAGAGGGTAATGATGATATTGATTTTGGGGACAATTTTTCCCATAATGTGGCAAAAGTAGATACAGAAAGCTTACGTCTATCCAGCCATGCTGCAGAATCCTTTCTTGCCCAAAGATGGAAAGAAGCTATCTCGTCAGACCATGTAAAATTGGTTTTCACACCTGATTCTGAGCCTCCTGGAGGACAGTCTGTCCAGGATTGTGAACTAGCAGCAGATGCTTATCTATCTTCTGATGCGGACAAATGTGGCGTTCTTGCAAGTACAGAGAACCGGTTCCCTGCAACCTCTGGAGTAGCAAGATCTAAACCCAAAACGAAGCCTGAAAAAGGAATGAAGATAAAGTACATTCCCAAACAAAAAGCAGCAGCCTAG 2052 0.4245 MPVAKLPASGTTGFTKTDDGNDSLDTIFRQAIGKEPLLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKKNRELLGAYWDKLSIEEAKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEQKNLVACTSFLLEQKLVKSWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKTKEQIENNTETKGNINSAGEDVSPGEASLGTRDFDAHNPDIFADHSPPPPHVTSHCLDANDVIEKDTLSGYDDCDTDQYIERQTLPGHNRRGTMPARWQGLPKSQWARANGLNAGQNSQPTKLGVIQKHRTSHDLRVAPIINGSKVWSRKPKAESNDLVLKNKLLKEPDKVKNHEVLIGSVSVSLGNCCHSGGNFMAPQRDCSAGNLSKLNTAQEKPGSNGRLTAKFWRPVSQHGTKDPFPLQNGGTEADAINGKIDENSSGQSSLRLCSVEGNDDIDFGDNFSHNVAKVDTESLRLSSHAAESFLAQRWKEAISSDHVKLVFTPDSEPPGGQSVQDCELAADAYLSSDADKCGVLASTENRFPATSGVARSKPKTKPEKGMKIKYIPKQKAAA* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2220 683 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Vra8g2220 683 Coils Coil 272 292 - -
Vra8g2220 683 MobiDBLite consensus disorder prediction 653 683 - -
Vra8g2220 683 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Vra8g2220 683 MobiDBLite consensus disorder prediction 279 315 - -
Vra8g2220 683 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2220 Vra-Chr8 40488407 40494704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2220 19 680 C2H2 Transcription Factor Family AT4G25610 42.793 7.83e-150 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2220 - - gmx:100799153 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2220 8 40488407 40494704 Vra8g2220 8 40488407 40494704 ECH
Vra1g1826 1 34830605 34837384 Vra8g2220 8 40488407 40494704 PCT