Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2216 ATGCTTACATGGTGGGGAAAATCATCATCAAAAGAAAGCAAGAAGAAATCAAATAAGGAAAGCTTTTTTGACACACTGCACCGGAAATTAAAAATTTCATCTGAAGGTAAACTAAGCACTAGATCTGGAGGATCCCGTAGAAATTGCAATGACACAGTTTCAGAGAAGGGGGATCGATCTCCAACTGAATCAAGATCACCTTCACCTTCCAAAGTGGGCAGGTGTCAAAGTTTCATTGAAAGACCTCATGCTCAGCCACTTCCTCTTCCTGGTCTGCACCCTTCAAGTGTAGGCCGAGTAGATTCTGAAATTAGCATATCATCAAAATCAAGATTGGAAAAGGTCTCCAAACCATCATTGTTTCTTCCACTTCCAACACCTGGATGCATCCGTTGTAAGCCAAACCCAGCAGATTTGGATGGAGATATGATCACTGCTTCAGTCTTTAGTGATTGCTCTGCTGACAGTGATGAGCTACACTCACACAATCGTAGTCCTCTAGTGGCTGACTGTGAGACTGGGATCAGAACTGCTGCTGGCAGTCCTTCCAGCTCAATGCCCAAGGATCAGCCAGTTGTCGCTTCCCAGCTCAATTCAGCAGGAGTAAAAAAACCAGGAAGTATTCTGAGTAATCATACATCTTCTACTTCACCAAAACGGAGGCCTTTACGCAACCATGTTCCAAATCTTCAGGTTCCTCCTCACGGTGCCTTCTACAGTGCTCCAGATAGTTCCTTGTCAAGTCCATCAAGAAGTCCACTGAGAGCATTTGGCACAGATCAGGTGTTGAATTCTGCTTTTTGGGCCGGAAAGCCATATTCAGAGGTCAACTTTGTTGGATCTGGACATTGCTCTAGTCCAGGTTCAGGTCACAATTCTGGACATAATTCGATGGGAGGGGACATGTCAGGACCTTTATTTTGGCAACCAAGCAGGGGTAGTCCAGAGTATTCTCCTGTACCTAGTCCCAGAATGACTAGCCCTGGTCCTAGCTCTAGAATTCAGAGTGGAGCTGTCACACCTATTCATCCCAAAGCCGGGGGAACACCCATTGAATCACAGACAGGAAGGTTTGATGATGGGAAACAGCAGACTCATCGTTTGCCACTTCCTCCTTTGTCAGTCTCCAATTCCTCACCATTCTCTCATTCAAATTCTGCAGCAACATCTCCGTCTATGCCAAGAAGTCCTGCTAGAGCAGATAATCCAGGCTCTGGCTCACGTTGGAAGAAAGGAAAGCTGCTTGGTAGTGGCTCATTTGGACATGTCTATCTTGGCTTCAATAGTGAAAGTGGCGAAATGTGTGCAGTGAAGGAGGTTACCCTGTTTTCAGATGATCCCAAGTCAATGGAAAGTGCTAAGCAATTTATGCAGGAAATTCATTTATTAAGCCGTTTACAGCATCCAAATATTGTCCGGTATTATGGTTCTGAAACAGTTGATGACAAGCTTTACATATACCTTGAATACGTGTCTGGTGGCTCCATACACAAACTTCTTCGAGAATATGGGCAGTTTGGAGAACTAGTTATTCGTAGCTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTGCATGCTAAAAATACTCTCCATCGGGACATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAATCGTGTCCATTATCATTCAAGGGAACCCCTTACTGGATGGCTCCTGAGGTTATAAAGAACTCTAATGGATGCAATCTTGCAGTAGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATACCAGATCATCTCTCAAATGAAGGAAAAGATTTTGTTAGGAAATGTCTTCAGCGTAACCCATATGATCGCCCTTCAGCGAGTGAATTATTGGACCACCCTTTTGTAAAACTTGCTGCACCTTTGGAAAGACCTATTCTGGTTCCTGAAGCAATGGATCCTGTTTCTGGGACTACACAGGGAGCAAAACCTCTGGCAATTGGACATGCAAAGAATCTTTCTACCTTGGATTCAGATAGACTTGCTGTTCATTCTTCAAGATTTTTGAAAATTAATCCTCATGAAAGTGAAATCCATATTCCAAAGAATATATCTTGCCCCGTATCTCCCATTGGAAGCCCACTTTTAAGGTCAAGATCACCACAGCACAGGAATGGTAAAATGTCTCCTTCTCCCATATCCAGCCCACGAACTGCTTCCGGGGCATCTACACCTCTCGCTGGTGGCAGTGGTGCCATTCCTTTTGGTAATCACTCTAAACAGTTAATTTACTTTCAAGAGAGTTTTGGAAGCATCCCTAAGTCCTCAAATGGTGTGTACGTTAATGGCCCTGCTCATCATGACTCAACTGTTGACATTTTTCGAGGAATGCAAATAGGGTCTCACATTCAATCAGAGCTGGTTTCCACTGAAAATGATGTTCTGGTTAAGCAGTTTGCAAGGCCTCCTCATGCAGAGCCATATGATTTTCAGTCAGTCTTGGCAGATCGTGTTGGCCGGCAGCTGCTGCGTGAACATGTTAAGATTAACCCATCCCTTGATCTCAGTCCCAACTCATCTTTGCTAAGCCGCCCAAATGGTTTATGA 2694 0.441 MLTWWGKSSSKESKKKSNKESFFDTLHRKLKISSEGKLSTRSGGSRRNCNDTVSEKGDRSPTESRSPSPSKVGRCQSFIERPHAQPLPLPGLHPSSVGRVDSEISISSKSRLEKVSKPSLFLPLPTPGCIRCKPNPADLDGDMITASVFSDCSADSDELHSHNRSPLVADCETGIRTAAGSPSSSMPKDQPVVASQLNSAGVKKPGSILSNHTSSTSPKRRPLRNHVPNLQVPPHGAFYSAPDSSLSSPSRSPLRAFGTDQVLNSAFWAGKPYSEVNFVGSGHCSSPGSGHNSGHNSMGGDMSGPLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPKAGGTPIESQTGRFDDGKQQTHRLPLPPLSVSNSSPFSHSNSAATSPSMPRSPARADNPGSGSRWKKGKLLGSGSFGHVYLGFNSESGEMCAVKEVTLFSDDPKSMESAKQFMQEIHLLSRLQHPNIVRYYGSETVDDKLYIYLEYVSGGSIHKLLREYGQFGELVIRSYTQQILSGLAYLHAKNTLHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGTPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWFQYEGVAAMFKIGNSKELPTIPDHLSNEGKDFVRKCLQRNPYDRPSASELLDHPFVKLAAPLERPILVPEAMDPVSGTTQGAKPLAIGHAKNLSTLDSDRLAVHSSRFLKINPHESEIHIPKNISCPVSPIGSPLLRSRSPQHRNGKMSPSPISSPRTASGASTPLAGGSGAIPFGNHSKQLIYFQESFGSIPKSSNGVYVNGPAHHDSTVDIFRGMQIGSHIQSELVSTENDVLVKQFARPPHAEPYDFQSVLADRVGRQLLREHVKINPSLDLSPNSSLLSRPNGL* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2216 897 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 810 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 284 299 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 1 100 - -
Vra8g2216 897 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Vra8g2216 897 SUPERFAMILY Protein kinase-like (PK-like) 407 666 IPR011009 -
Vra8g2216 897 ProSiteProfiles Protein kinase domain profile. 409 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2216 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 810 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 36 50 - -
Vra8g2216 897 SMART serkin_6 409 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2216 897 MobiDBLite consensus disorder prediction 200 252 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 200 222 - -
Vra8g2216 897 Pfam Protein kinase domain 410 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2216 897 MobiDBLite consensus disorder prediction 9 35 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 369 396 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 744 774 - -
Vra8g2216 897 CDD STKc_MEKK1_plant 408 665 - -
Vra8g2216 897 Gene3D Transferase(Phosphotransferase) domain 1 406 682 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 740 780 - -
Vra8g2216 897 MobiDBLite consensus disorder prediction 284 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2216 Vra-Chr8 40462405 40470445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2216 2 886 MAP Kinase Kinase Kinase AT1G63700 58.837 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra8g2216 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2216 K20717 - gmx:100797994 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2216 8 40462405 40470445 Vra8g2216 8 40462405 40470445 ECH