Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2208 ATGAAGGGAAGCTTGGGCAGTGCCAGTTTGGCTCTGAACACGATAGATCCTGATGAGAGCAGGGATATTGTGAACAAGACAGCAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATTCAAACATGTCCGTTCCTGTCAGAAGTGATGGTGTCTCTGATGCACANTCAACTGAATGCCCAACAACTAGTGAACCACAGAATCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTATTGAACAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCTAGTATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAGAGGATTGAGCTGTGGGACCTCTTCTCCCAAGAAGGTAATGCTGGGTCTGATCACAGCCGCAGCCTCTGCAGCAACATCGATAGTGTGCATAGCACACAATGGAAACACAGGTGCCAATTGGTTTGCAATCTGCCAACAATTCAACAACTTCTGTGAACGCATTTCGGGTTCTCTCATTGGCTCTTACATTGCTGTTGCTCTCTTCACAATACTAATCATCCTATCAGTTGTTGCAATCTCTCGAAACTAA 615 0.4537 MKGSLGSASLALNTIDPDESRDIVNKTAVSKGIPLPLPMHSNMSVPVRSDGVSDAXSTECPTTSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANRGLSCGTSSPKKVMLGLITAAASAATSIVCIAHNGNTGANWFAICQQFNNFCERISGSLIGSYIAVALFTILIILSVVAISRN* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2208 204 PANTHER TRANSCRIPTION FACTOR BIM2 11 133 - -
Vra8g2208 204 Pfam Casparian strip membrane protein domain 133 189 IPR006702 -
Vra8g2208 204 MobiDBLite consensus disorder prediction 40 72 - -
Vra8g2208 204 MobiDBLite consensus disorder prediction 55 72 - -
Vra8g2208 204 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 133 200 IPR006459 -
Vra8g2208 204 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 11 133 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2208 Vra-Chr8 40400564 40411660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2208 52 132 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 59.259 9.38e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2208 - - vra:106770645 389.808